Skip to content

Commit

Permalink
add more packages to rare_variation
Browse files Browse the repository at this point in the history
  • Loading branch information
danielnachun committed Sep 20, 2023
1 parent 8fff47a commit 66bc095
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions container/containers.csv
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@ plink2,https://www.cog-genomics.org/plink/2.0/,C/C++,2.00a3.7,N/A,bioconda,bioin
qtl,https://pypi.org/project/qtl/,Python,0.1.8,N/A,dnachun,bioinfo,BSD-3-Clause,https://anaconda.org/dnachun/qtl,Fix license info
snpeff,http://pcingola.github.io/SnpEff/,Java,5.1,N/A,bioconda,bioinfo,LGPL-3.0-or-later,https://anaconda.org/bioconda/snpeff,
snpsift,http://pcingola.github.io/SnpEff/,Java,5.1,N/A,bioconda,bioinfo,LGPL-3.0-or-later,https://anaconda.org/bioconda/snpsift,
bcftools,https://samtools.github.io/bcftools/,C/C++,1.17,N/A,bioconda,"bioinfo, apex, fastenloc, pcatools",GPL-3.0-or-later,https://anaconda.org/bioconda/bcftools,
bcftools,https://samtools.github.io/bcftools/,C/C++,1.17,N/A,bioconda,"bioinfo, apex, fastenloc, pcatools, rare_variation",GPL-3.0-or-later,https://anaconda.org/bioconda/bcftools,
r-igraph,https://cran.r-project.org/web/packages/igraph/index.html,R,1.5.1,N/A,conda-forge,bioinfo,GPL-2.0-or-later,https://anaconda.org/conda-forge/r-igraph,
dapars2,https://github.com/cumc/xqtl-pipeline,Python,1,b2fda460cc562aa80b5c1cd12e0d4d0305a40a88,dnachun,dapars2,Other,https://anaconda.org/dnachun/dapars2,
samtools,https://samtools.github.io/samtools/,C/C++,1.17,N/A,bioconda,"dapars2, rna_quantification, leafcutter",MIT,https://anaconda.org/bioconda/samtools,
samtools,https://samtools.github.io/samtools/,C/C++,1.17,N/A,bioconda,"dapars2, rna_quantification, leafcutter, rare_variation",MIT,https://anaconda.org/bioconda/samtools,
dap-g,https://github.com/xqwen/dap,C/C++,1.0.0,875ba40b7b28d6972fb94e6d2fb352ce1aaa92a7,dnachun,fastenloc,AGPL-3.0-or-later,https://anaconda.org/dnachun/dap-g,
fastenloc,https://github.com/xqwen/fastenloc,C/C++,2,N/A,dnachun,fastenloc,GPL-3.0-or-later,https://anaconda.org/dnachun/fastenloc,
torus,https://github.com/xqwen/torus,C/C++,1,f21fac0546c0bd51e5029b103d8c6fe38757019f,dnachun,fastenloc,Other,https://anaconda.org/dnachun/torus,
Expand Down Expand Up @@ -40,6 +40,9 @@ bioconductor-psichomics,https://bioconductor.org/packages/release/bioc/html/psic
suppa,https://pypi.org/project/SUPPA/,Python,2.3,N/A,bioconda,psichomics,MIT,https://anaconda.org/bioconda/suppa,
r-watershedr,https://github.com/nicolerg/WatershedR,R,1.0.0,N/A,dnachun,rare_variation,MIT,https://anaconda.org/dnachun/r-watershedr,
ensembl-vep,https://github.com/Ensembl/ensembl-vep,Perl,103.1,N/A,dnachun,rare_variation,Apache-2.0,https://anaconda.org/bioconda/ensembl-vep,
perl-bio-bigfile,https://metacpan.org/dist/Bio-BigFile,Perl,1.07,N/A,bioconda,rare_variation,Apache-2.0,https://anaconda.org/bioconda/perl-bio-bigfile,
perl-bio-procedural,https://metacpan.org/dist/Bio-Procedural,Perl,1.7.4,N/A,bioconda,rare_variation,GPL-1.0-or-later,https://anaconda.org/bioconda/perl-bio-procedural,
perl-dbd-sqlite,https://metacpan.org/pod/DBD::SQLite,Perl,1.72,N/A,bioconda,rare_variation,GPL-2.0-or-later,https://anaconda.org/bioconda/perl-dbd-sqlite,
bamtools,https://github.com/pezmaster31/bamtools,C/C++,2.5.2,N/A,bioconda,rna_quantification,MIT,https://anaconda.org/bioconda/bamtools,
bedtools,https://github.com/arq5x/bedtools2,C/C++,2.31.0,N/A,bioconda,rna_quantification,MIT,https://anaconda.org/bioconda/bedtools,
fastp,https://github.com/OpenGene/fastp,C/C++,0.23.4,N/A,bioconda,rna_quantification,MIT,https://anaconda.org/bioconda/fastp,
Expand Down

0 comments on commit 66bc095

Please sign in to comment.