Update YAML files and Markdown table

cumc · Oct 2, 2023 · b148f34 · b148f34
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diff --git a/container/README.md b/container/README.md
@@ -87,6 +87,7 @@ On occasion, you may see errors that a download or upload has failed while build
 | r-watershedr                                      | [Link](https://github.com/nicolerg/WatershedR)                                                                   | [Link](https://anaconda.org/dnachun/r-watershedr)                                       | rare_variation                                     | 1.0.0      | dnachun            | MIT                                    |
 | bamtools                                          | [Link](https://github.com/pezmaster31/bamtools)                                                                  | [Link](https://anaconda.org/bioconda/bamtools)                                          | rna_quantification                                 | 2.5.2      | bioconda           | MIT                                    |
 | bedtools                                          | [Link](https://github.com/arq5x/bedtools2)                                                                       | [Link](https://anaconda.org/bioconda/bedtools)                                          | rna_quantification                                 | 2.31.0     | bioconda           | MIT                                    |
+| deepTools                                         | [Link](https://github.com/deeptools/deepTools)                                                                   | [Link](https://anaconda.org/bioconda/deeptools)                                         | rna_quantification                                 |            | Bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | fastp                                             | [Link](https://github.com/OpenGene/fastp)                                                                        | [Link](https://anaconda.org/bioconda/fastp)                                             | rna_quantification                                 | 0.23.4     | bioconda           | MIT                                    |
 | fastqc                                            | [Link](https://github.com/s-andrews/FastQC)                                                                      | [Link](https://anaconda.org/bioconda/fastqc)                                            | rna_quantification                                 | 0.12.1     | bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | gffread                                           | [Link](https://github.com/gpertea/gffread)                                                                       | [Link](https://anaconda.org/bioconda/gffread)                                           | rna_quantification                                 | 0.12.7     | bioconda           | MIT                                    |

diff --git a/container/readme/containers.md b/container/readme/containers.md
@@ -44,6 +44,7 @@
 | r-watershedr                                      | [Link](https://github.com/nicolerg/WatershedR)                                                                   | [Link](https://anaconda.org/dnachun/r-watershedr)                                       | rare_variation                                     | 1.0.0      | dnachun            | MIT                                    |
 | bamtools                                          | [Link](https://github.com/pezmaster31/bamtools)                                                                  | [Link](https://anaconda.org/bioconda/bamtools)                                          | rna_quantification                                 | 2.5.2      | bioconda           | MIT                                    |
 | bedtools                                          | [Link](https://github.com/arq5x/bedtools2)                                                                       | [Link](https://anaconda.org/bioconda/bedtools)                                          | rna_quantification                                 | 2.31.0     | bioconda           | MIT                                    |
+| deepTools                                         | [Link](https://github.com/deeptools/deepTools)                                                                   | [Link](https://anaconda.org/bioconda/deeptools)                                         | rna_quantification                                 |            | Bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | fastp                                             | [Link](https://github.com/OpenGene/fastp)                                                                        | [Link](https://anaconda.org/bioconda/fastp)                                             | rna_quantification                                 | 0.23.4     | bioconda           | MIT                                    |
 | fastqc                                            | [Link](https://github.com/s-andrews/FastQC)                                                                      | [Link](https://anaconda.org/bioconda/fastqc)                                            | rna_quantification                                 | 0.12.1     | bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | gffread                                           | [Link](https://github.com/gpertea/gffread)                                                                       | [Link](https://anaconda.org/bioconda/gffread)                                           | rna_quantification                                 | 0.12.7     | bioconda           | MIT                                    |

diff --git a/container/rna_quantification/rna_quantification.yml b/container/rna_quantification/rna_quantification.yml
@@ -7,6 +7,7 @@ channels:
 dependencies:
   - bamtools=2.5.2
   - bedtools=2.31.0
+  - deepTools
   - fastp=0.23.4
   - fastqc=0.12.1
   - gffread=0.12.7