From bb048e8c4ccbc9d1d039c808e3e4d924b86e1b47 Mon Sep 17 00:00:00 2001 From: al4225 Date: Tue, 17 Sep 2024 19:07:20 +0000 Subject: [PATCH] Update YAML files and Markdown table --- container/README.md | 1 + container/pecotmr/pecotmr.yml | 1 + container/readme/containers.md | 1 + 3 files changed, 3 insertions(+) diff --git a/container/README.md b/container/README.md index 1d49cfe2..c9d0c011 100644 --- a/container/README.md +++ b/container/README.md @@ -95,6 +95,7 @@ On occasion, you may see errors that a download or upload has failed while build | bioconductor-biocsingular | [Link](https://bioconductor.org/packages/release/bioc/html/BiocSingular.html) | [Link](https://anaconda.org/bioconda/bioconductor-biocsingular) | pcatools | 1.16.0 | bioconda | GPL‑3.0‑or‑later | | bioconductor-pcatools | [Link](https://www.bioconductor.org/packages/release/bioc/html/PCAtools.html) | [Link](https://anaconda.org/bioconda/bioconductor-pcatools) | pcatools | 2.12.0 | bioconda | GPL‑3.0‑or‑later | | r-rmtstat | [Link](https://cran.r-project.org/web/packages/RMTstat/index.html) | [Link](https://anaconda.org/conda-forge/r-rmtstat) | pcatools | 0.3.1 | conda‑forge | BSD‑3‑Clause | +| r-bigsnpr | [Link](https://privefl.github.io/bigsnpr/) | [Link](https://anaconda.org/conda-forge/r-bigsnpr) | pecotmr | 1.12.2 | conda‑forge | GPL‑3.0‑or‑later | | r-fsusier | [Link](https://github.com/stephenslab/fsusier) | [Link](https://anaconda.org/dnachun/r-fsusier) | pecotmr | 0.2.0 | dnachun | GPL‑3.0‑or‑later | | r-mvsusier | [Link](https://github.com/stephenslab/mvsusieR) | [Link](https://anaconda.org/dnachun/r-mvsusier) | pecotmr | 0.1.7 | dnachun | GPL‑3.0‑or‑later | | r-pecotmr | [Link](https://github.com/cumc/pecotmr) | [Link](https://anaconda.org/dnachun/r-pecotmr) | pecotmr | 0.1.69 | dnachun | GPL‑3.0‑or‑later | diff --git a/container/pecotmr/pecotmr.yml b/container/pecotmr/pecotmr.yml index a6b756b6..c75cfcdd 100644 --- a/container/pecotmr/pecotmr.yml +++ b/container/pecotmr/pecotmr.yml @@ -9,6 +9,7 @@ dependencies: - bioconductor-variantannotation=1.48.1 - htslib - python-ldstore=0.1.9 + - r-bigsnpr=1.12.2 - r-complexupset=1.3.3 - r-cowplot=1.1.1 - r-fsusier=0.2.0 diff --git a/container/readme/containers.md b/container/readme/containers.md index 02795705..4efae25b 100644 --- a/container/readme/containers.md +++ b/container/readme/containers.md @@ -45,6 +45,7 @@ | bioconductor-biocsingular | [Link](https://bioconductor.org/packages/release/bioc/html/BiocSingular.html) | [Link](https://anaconda.org/bioconda/bioconductor-biocsingular) | pcatools | 1.16.0 | bioconda | GPL‑3.0‑or‑later | | bioconductor-pcatools | [Link](https://www.bioconductor.org/packages/release/bioc/html/PCAtools.html) | [Link](https://anaconda.org/bioconda/bioconductor-pcatools) | pcatools | 2.12.0 | bioconda | GPL‑3.0‑or‑later | | r-rmtstat | [Link](https://cran.r-project.org/web/packages/RMTstat/index.html) | [Link](https://anaconda.org/conda-forge/r-rmtstat) | pcatools | 0.3.1 | conda‑forge | BSD‑3‑Clause | +| r-bigsnpr | [Link](https://privefl.github.io/bigsnpr/) | [Link](https://anaconda.org/conda-forge/r-bigsnpr) | pecotmr | 1.12.2 | conda‑forge | GPL‑3.0‑or‑later | | r-fsusier | [Link](https://github.com/stephenslab/fsusier) | [Link](https://anaconda.org/dnachun/r-fsusier) | pecotmr | 0.2.0 | dnachun | GPL‑3.0‑or‑later | | r-mvsusier | [Link](https://github.com/stephenslab/mvsusieR) | [Link](https://anaconda.org/dnachun/r-mvsusier) | pecotmr | 0.1.7 | dnachun | GPL‑3.0‑or‑later | | r-pecotmr | [Link](https://github.com/cumc/pecotmr) | [Link](https://anaconda.org/dnachun/r-pecotmr) | pecotmr | 0.1.69 | dnachun | GPL‑3.0‑or‑later |