Merge pull request #983 from cumc/gw_container_update

pecotmr version bump
cumc · Apr 23, 2024 · e6a5965 · e6a5965
2 parents 10e2b82 + 6f170a4
commit e6a5965
Show file tree

Hide file tree

Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/container/README.md b/container/README.md
@@ -96,8 +96,8 @@ On occasion, you may see errors that a download or upload has failed while build
 | bioconductor-pcatools                             | [Link](https://www.bioconductor.org/packages/release/bioc/html/PCAtools.html)                                    | [Link](https://anaconda.org/bioconda/bioconductor-pcatools)                             | pcatools                                                                            | 2.12.0     | bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | r-rmtstat                                         | [Link](https://cran.r-project.org/web/packages/RMTstat/index.html)                                               | [Link](https://anaconda.org/conda-forge/r-rmtstat)                                      | pcatools                                                                            | 0.3.1      | conda&#x2011;forge | BSD&#x2011;3&#x2011;Clause             |
 | r-fsusier                                         | [Link](https://github.com/stephenslab/fsusier)                                                                   | [Link](https://anaconda.org/dnachun/r-fsusier)                                          | pecotmr                                                                             | 0.2.0      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
-| r-mvsusier                                        | [Link](https://github.com/stephenslab/mvsusieR)                                                                  | [Link](https://anaconda.org/dnachun/r-mvsusier)                                         | pecotmr                                                                             | 0.1.6      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
-| r-pecotmr                                         | [Link](https://github.com/cumc/pecotmr)                                                                          | [Link](https://anaconda.org/dnachun/r-pecotmr)                                          | pecotmr                                                                             | 0.1.54     | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
+| r-mvsusier                                        | [Link](https://github.com/stephenslab/mvsusieR)                                                                  | [Link](https://anaconda.org/dnachun/r-mvsusier)                                         | pecotmr                                                                             | 0.1.7      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
+| r-pecotmr                                         | [Link](https://github.com/cumc/pecotmr)                                                                          | [Link](https://anaconda.org/dnachun/r-pecotmr)                                          | pecotmr                                                                             | 0.1.56     | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | r-susier                                          | [Link](https://github.com/stephenslab/susieR)                                                                    | [Link](https://anaconda.org/conda-forge/r-susier)                                       | pecotmr, fastenloc                                                                  | 0.14.7     | conda&#x2011;forge | MIT                                    |
 | backports.zoneinfo                                | [Link](https://pypi.org/project/backports.zoneinfo/)                                                             | [Link](https://anaconda.org/conda-forge/backports.zoneinfo)                             | pecotmr, quantqtl                                                                   | 0.2.1      | conda&#x2011;forge | Apache&#x2011;2.0                      |
 | bioconductor-variantannotation                    | [Link](https://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html)                               | [Link](https://anaconda.org/bioconda/bioconductor-variantannotation)                    | pecotmr, quantqtl                                                                   | 1.48.1     | bioconda           | Artistic&#x2011;2.0                    |

diff --git a/container/containers.csv b/container/containers.csv
@@ -72,8 +72,8 @@ star,https://github.com/alexdobin/STAR,C/C++,2.7.11b,N/A,bioconda,rna_quantifica
 trimmomatic,https://github.com/timflutre/trimmomatic,Java,0.39,N/A,bioconda,rna_quantification,GPL-3.0-or-later,https://anaconda.org/bioconda/trimmomatic,
 gtex-pipeline-qtl,https://github.com/broadinstitute/gtex-pipeline/tree/master/qtl,Python,gtex_v8,bed31e12a48b25db8b111252e2136b31c64c9e82,dnachun,rna_quantification,Other,https://anaconda.org/dnachun/gtex-pipeline-qtl,
 pandas,https://pypi.org/project/pandas/,Python,1.3.5,N/A,conda-forge,"rna_quantification, tensorqtl, quantqtl",BSD-3-Clause,https://anaconda.org/conda-forge/pandas,
-r-mvsusier,https://github.com/stephenslab/mvsusieR,R,0.1.6,N/A,dnachun,pecotmr,GPL-3.0-or-later,https://anaconda.org/dnachun/r-mvsusier,
-r-pecotmr,https://github.com/cumc/pecotmr,R,0.1.54,N/A,dnachun,pecotmr,GPL-3.0-or-later,https://anaconda.org/dnachun/r-pecotmr,
+r-mvsusier,https://github.com/stephenslab/mvsusieR,R,0.1.7,N/A,dnachun,pecotmr,GPL-3.0-or-later,https://anaconda.org/dnachun/r-mvsusier,
+r-pecotmr,https://github.com/cumc/pecotmr,R,0.1.56,N/A,dnachun,pecotmr,GPL-3.0-or-later,https://anaconda.org/dnachun/r-pecotmr,
 r-fsusier,https://github.com/stephenslab/fsusier,R,0.2.0,dd4df3668d2ca59dd34a52b6c1b426054a998fbd,dnachun,pecotmr,GPL-3.0-or-later,https://anaconda.org/dnachun/r-fsusier,
 backports.zoneinfo,https://pypi.org/project/backports.zoneinfo/,Python,0.2.1,N/A,conda-forge,"pecotmr, quantqtl",Apache-2.0,https://anaconda.org/conda-forge/backports.zoneinfo,
 bioconductor-variantannotation,https://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html,R,1.48.1,N/A,bioconda,"pecotmr, quantqtl",Artistic-2.0,https://anaconda.org/bioconda/bioconductor-variantannotation,

diff --git a/container/pecotmr/pecotmr.yml b/container/pecotmr/pecotmr.yml
@@ -14,8 +14,8 @@ dependencies:
   - r-fsusier=0.2.0
   - r-genio=1.1.2
   - r-gwasrapidd=0.99.14
-  - r-mvsusier=0.1.6
-  - r-pecotmr=0.1.54
+  - r-mvsusier=0.1.7
+  - r-pecotmr=0.1.56
   - r-susier=0.14.7
   - r-udr=0.3.154
   - altair

diff --git a/container/readme/containers.md b/container/readme/containers.md
@@ -46,8 +46,8 @@
 | bioconductor-pcatools                             | [Link](https://www.bioconductor.org/packages/release/bioc/html/PCAtools.html)                                    | [Link](https://anaconda.org/bioconda/bioconductor-pcatools)                             | pcatools                                                                            | 2.12.0     | bioconda           | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | r-rmtstat                                         | [Link](https://cran.r-project.org/web/packages/RMTstat/index.html)                                               | [Link](https://anaconda.org/conda-forge/r-rmtstat)                                      | pcatools                                                                            | 0.3.1      | conda&#x2011;forge | BSD&#x2011;3&#x2011;Clause             |
 | r-fsusier                                         | [Link](https://github.com/stephenslab/fsusier)                                                                   | [Link](https://anaconda.org/dnachun/r-fsusier)                                          | pecotmr                                                                             | 0.2.0      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
-| r-mvsusier                                        | [Link](https://github.com/stephenslab/mvsusieR)                                                                  | [Link](https://anaconda.org/dnachun/r-mvsusier)                                         | pecotmr                                                                             | 0.1.6      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
-| r-pecotmr                                         | [Link](https://github.com/cumc/pecotmr)                                                                          | [Link](https://anaconda.org/dnachun/r-pecotmr)                                          | pecotmr                                                                             | 0.1.54     | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
+| r-mvsusier                                        | [Link](https://github.com/stephenslab/mvsusieR)                                                                  | [Link](https://anaconda.org/dnachun/r-mvsusier)                                         | pecotmr                                                                             | 0.1.7      | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
+| r-pecotmr                                         | [Link](https://github.com/cumc/pecotmr)                                                                          | [Link](https://anaconda.org/dnachun/r-pecotmr)                                          | pecotmr                                                                             | 0.1.56     | dnachun            | GPL&#x2011;3.0&#x2011;or&#x2011;later  |
 | r-susier                                          | [Link](https://github.com/stephenslab/susieR)                                                                    | [Link](https://anaconda.org/conda-forge/r-susier)                                       | pecotmr, fastenloc                                                                  | 0.14.7     | conda&#x2011;forge | MIT                                    |
 | backports.zoneinfo                                | [Link](https://pypi.org/project/backports.zoneinfo/)                                                             | [Link](https://anaconda.org/conda-forge/backports.zoneinfo)                             | pecotmr, quantqtl                                                                   | 0.2.1      | conda&#x2011;forge | Apache&#x2011;2.0                      |
 | bioconductor-variantannotation                    | [Link](https://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html)                               | [Link](https://anaconda.org/bioconda/bioconductor-variantannotation)                    | pecotmr, quantqtl                                                                   | 1.48.1     | bioconda           | Artistic&#x2011;2.0                    |