diff --git a/DESCRIPTION b/DESCRIPTION index 3c6ba61..f1c8666 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: cvasi Type: Package Title: Calibration, Validation, and Simulation of TKTD Models -Version: 1.2.0 +Version: 1.3.0 Authors@R: c( person("Nils", "Kehrein", email="nils.kehrein@gmail.com", role=c("aut", "cre")), person("Dirk", "Nickisch", role="aut"), diff --git a/R/data.R b/R/data.R index d218a39..32df46d 100644 --- a/R/data.R +++ b/R/data.R @@ -4,7 +4,7 @@ #' exposure series. Model parameters were derived from an acute fish toxicity #' study of the fathead minnow and chlorpyrifos by Geiger *et al.* (1988). #' The dataset is also referred to as *GUTS Ring-test dataset C* by -#' EFSA (2018). Fitted parameters were estimated using the [morse] package. +#' EFSA (2018). Fitted parameters were estimated using the *morse* package. #' #' The background mortality rate (`hb`) was set to zero. #' @@ -30,7 +30,7 @@ #' exposure series. Model parameters were derived from an acute fish toxicity #' study of the fathead minnow and chlorpyrifos by Geiger *et al.* (1988). #' The dataset is also referred to as *GUTS Ring-test dataset C* by -#' EFSA (2018). Fitted parameters were estimated using the [morse] package. +#' EFSA (2018). Fitted parameters were estimated using the *morse* package. #' #' The background mortality rate (`hb`) was set to zero. #' diff --git a/R/get.R b/R/get.R index 7306a25..3ddf2de 100644 --- a/R/get.R +++ b/R/get.R @@ -27,7 +27,7 @@ get_vars <- function(x) { #' #' @return vector of `character` #' @aliases get_model,ANY-method get_model,list-method get_model,EffectScenario-method -#' get_model,parameter_set-method get_model_name +#' get_model,ParameterSet-method get_model_name #' @export #' #' @examples @@ -59,7 +59,7 @@ get_model_name <- function(x) { #' #' @return vector of `character` #' @aliases get_tag,ANY-method get_tag,list-method get_tag,EffectScenario-method -#' get_tag,parameter_set-method +#' get_tag,ParameterSet-method #' @seealso [set_tag()] #' @export #' diff --git a/man/get_model.Rd b/man/get_model.Rd index 70e33d2..d653aa1 100644 --- a/man/get_model.Rd +++ b/man/get_model.Rd @@ -5,7 +5,7 @@ \alias{get_model,ANY-method} \alias{get_model,list-method} \alias{get_model,EffectScenario-method} -\alias{get_model,parameter_set-method} +\alias{get_model,ParameterSet-method} \alias{get_model_name} \title{Get model name} \usage{ diff --git a/man/get_tag.Rd b/man/get_tag.Rd index ebcda40..3c02f45 100644 --- a/man/get_tag.Rd +++ b/man/get_tag.Rd @@ -5,7 +5,7 @@ \alias{get_tag,ANY-method} \alias{get_tag,list-method} \alias{get_tag,EffectScenario-method} -\alias{get_tag,parameter_set-method} +\alias{get_tag,ParameterSet-method} \title{Get scenario tag} \usage{ get_tag(x) diff --git a/man/minnow_it.Rd b/man/minnow_it.Rd index cb8eeeb..cc909d2 100644 --- a/man/minnow_it.Rd +++ b/man/minnow_it.Rd @@ -18,7 +18,7 @@ The scenario consists of a parameterized GUTS-RED-IT model and a constant exposure series. Model parameters were derived from an acute fish toxicity study of the fathead minnow and chlorpyrifos by Geiger \emph{et al.} (1988). The dataset is also referred to as \emph{GUTS Ring-test dataset C} by -EFSA (2018). Fitted parameters were estimated using the \link{morse} package. +EFSA (2018). Fitted parameters were estimated using the \emph{morse} package. } \details{ The background mortality rate (\code{hb}) was set to zero. diff --git a/man/minnow_sd.Rd b/man/minnow_sd.Rd index 0082055..324c22d 100644 --- a/man/minnow_sd.Rd +++ b/man/minnow_sd.Rd @@ -18,7 +18,7 @@ The scenario consists of a parameterized GUTS-RED-SD model and a constant exposure series. Model parameters were derived from an acute fish toxicity study of the fathead minnow and chlorpyrifos by Geiger \emph{et al.} (1988). The dataset is also referred to as \emph{GUTS Ring-test dataset C} by -EFSA (2018). Fitted parameters were estimated using the \link{morse} package. +EFSA (2018). Fitted parameters were estimated using the \emph{morse} package. } \details{ The background mortality rate (\code{hb}) was set to zero.