diff --git a/src/sspa/process_pathways.py b/src/sspa/process_pathways.py index b201129..68b2f6b 100644 --- a/src/sspa/process_pathways.py +++ b/src/sspa/process_pathways.py @@ -56,7 +56,7 @@ def process_kegg(organism, infile=None, download_latest=False, filepath=None, om GMT-like pd.DataFrame containing KEGG pathways ''' if download_latest: - pathways_df = sspa.download_pathways.download_KEGG(organism, filepath) + pathways_df = sspa.download_pathways.download_KEGG(organism, filepath, omics_type) return pathways_df else: