From b2fe5978f144ed9e63d04606dcd7b43be1d16408 Mon Sep 17 00:00:00 2001 From: cwieder Date: Thu, 4 Jul 2024 10:43:15 +0100 Subject: [PATCH] update kegg download pathways --- src/sspa/process_pathways.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sspa/process_pathways.py b/src/sspa/process_pathways.py index b201129..68b2f6b 100644 --- a/src/sspa/process_pathways.py +++ b/src/sspa/process_pathways.py @@ -56,7 +56,7 @@ def process_kegg(organism, infile=None, download_latest=False, filepath=None, om GMT-like pd.DataFrame containing KEGG pathways ''' if download_latest: - pathways_df = sspa.download_pathways.download_KEGG(organism, filepath) + pathways_df = sspa.download_pathways.download_KEGG(organism, filepath, omics_type) return pathways_df else: