(pip)pip3 install scanpy --upgrade
(pip)pip3 install anndata --upgrade
(pip)pip3 install cellxgene --upgrade --user
cellxgene launch [path-to-your-object/name-object.h5ad] --experimental-annotations-ontology --experimental-enable-reembedding --open
- follow inside () for ubuntu
- to open terminal go to spotlight (magnifying glass symbol on the very top right corner) and type
terminal
- if you don't know your file path, get a finder window right next to the terminal window. Select the h5ad file in finder and drag it to terminal