manifest.json

{
  "name": "histoqc",
  "label": "Histoqc",
  "description": "This package provides quality control tool for digital pathology slide.",
  "author": "D3b-TIRU",
  "maintainer": "D3b-TIRU <flywheel@d3b.center>",
  "source": "https://github.com/d3b-center/fw-histoqc", 
  "url":"https://github.com/choosehappy/HistoQC",
  "version": "0.5.1",
  "license": "BSD-3-Clause",
  "custom": {
    "gear-builder": {
      "category": "utility",
      "image": "chop.flywheel.io/histoqc:0.5.1"
    },
    "flywheel": {
      "suite": "HistoQC"
    }
  },
  "inputs": {
    "api-key": {
      "base": "api-key",
      "read-only": true
    },
    "input_image": {
      "base": "file",
      "description": "Input image (.svs).",
      "optional": false,
      "type": {
        "enum": [
          ".svs"
        ]
      }
    }
  },
    "config": {
      "config_file": {
        "base": "file",
        "description": "Config file (.ini) to use instead of default (v2.1).",
        "type": "string",
        "default": "config_v2.1.ini"
      }
    },
 "environment":{
    "HOME":"/root",
    "HOSTNAME":"0b633f948575",
    "MESA_GL_VERSION_OVERRIDE":"3.2",
    "PATH":"/flywheel/v0/HistoQC/venv/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
    "QT_GRAPHICSSYSTEM":"native",
    "QT_X11_NO_MITSHM":"1",
    "SHLVL":"1",
    "TERM":"xterm"
  }
}