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screenOutput.txt
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screenOutput.txt
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>>>>> > 2016-04-30T20:39:05.451254
check_runs() > > Wait for runs to finish ..
> A specified list will be watched .. > 25
> The total_wait is (Sec)>> > 600
>>>>> > 2016-04-30T20:57:07.398103
check_runs() > > Wait for runs to finish ..
>>>>> > 2016-04-30T20:57:07.935048
do_swan_adj() > > Adjust swan members ..
>>>>> > 2016-04-30T21:07:35.287502
do_pre_assim_wave(itr, dirs) > > WAV is getting ready for assimilation ..
Traceback (most recent call last):
File "05-pre_asim_wav.py", line 65, in <module>
import octant.csa as csa
ImportError: No module named octant.csa
>>>>> > 2016-04-30T21:07:39.394709
do_assimilate_py() > > run python assimilation routine ..
ssh tirigan "cd /home/shusin3/shared/assim/dah_1/run_1000/05_assimilate; /home/nmg/nmg/opt/anaconda/bin/python -u 05-py-assimilate.py 0 ; touch assimdone "
> Assim. WAV
> Reduce WAV 1.0
> k
Traceback (most recent call last):
File "05-py-assimilate.py", line 178, in <module>
wavenc = netCDF4.Dataset(wpick_name)
File "netCDF4/_netCDF4.pyx", line 1616, in netCDF4._netCDF4.Dataset.__init__ (netCDF4/_netCDF4.c:9689)
RuntimeError: No such file or directory
>>>>> > 2016-04-30T21:07:43.140277
mk_new_prior() > > making new prior getting ready for next iteration ..
> Finish this part > With Success <
Start forward run > 0 from > 0
create_dirs() > /home/shusin3/shared/assim/dah_1/run_1000/
cp: cannot stat `/home/shusin3/shared/assim/dah_1/run_1000/06_mat2prior/new_prior.nc': No such file or directory
>>>>> > 2016-04-30T21:07:46.142754
do_forward_run() > > Start forward run for ...
/home/shusin3/shared/assim/dah_1/run_1000/00_prior
Start SWAN forward run > 0 from > 0
create_dirs() > /home/shusin3/shared/assim/dah_1/run_1000/
Invalid null command.
>>>>> > 2016-04-30T21:07:47.065575
do_forward_run() > > Start forward swan run for ...
/home/shusin3/shared/assim/dah_1/run_1000/00_prior
> > Start SWAN forward run for ... /home/shusin3/shared/assim/dah_1/run_1000/08_forward_swan
ln: creating symbolic link `/home/shusin3/shared/assim/dah_1/run_1000/08_forward_swan/08_forward/swan' to `/home/shusin3/shared/assim/dah_1/inp/const//swan/swan_ser': No such file or directory
cp: cannot create regular file `/home/shusin3/shared/assim/dah_1/run_1000/08_forward_swan/08_forward/INPUT': No such file or directory
create_dirs() > /home/shusin3/shared/assim/dah_1/run_1000/
/home/shusin3/shared/assim/dah_1/run_1000/08_forward_swan/08_forward/: No such file or directory.
do_swan_adj() > > Adjust forward swan run ..
Traceback (most recent call last):
File "04-simplify_swan.py", line 90, in <module>
xp = pl.loadtxt(dir_in + '/xp.blkout' )
File "/home/nmg/nmg/opt/anaconda/lib/python2.7/site-packages/numpy/lib/npyio.py", line 691, in loadtxt
fh = iter(open(fname, 'U'))
IOError: [Errno 2] No such file or directory: '/home/shusin3/shared/assim/dah_1/run_1000/08_forward_swan/08_forward//xp.blkout'
> Finish forward run too > With Success <