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ggmap_mapdeck.tex
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\documentclass[10,portrait]{article}
\usepackage{lmodern}
\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\else % if luatex or xelatex
\ifxetex
\usepackage{mathspec}
\else
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\fi
\defaultfontfeatures{Ligatures=TeX,Scale=MatchLowercase}
\fi
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
% use microtype if available
\IfFileExists{microtype.sty}{%
\usepackage[]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\PassOptionsToPackage{hyphens}{url} % url is loaded by hyperref
\usepackage[unicode=true]{hyperref}
\PassOptionsToPackage{usenames,dvipsnames}{color} % color is loaded by hyperref
\hypersetup{
pdftitle={Title},
colorlinks=true,
linkcolor=blue,
citecolor=red,
urlcolor=blue,
breaklinks=true}
\urlstyle{same} % don't use monospace font for urls
\usepackage[margin=1in]{geometry}
\usepackage[]{biblatex}
\usepackage{color}
\usepackage{fancyvrb}
\newcommand{\VerbBar}{|}
\newcommand{\VERB}{\Verb[commandchars=\\\{\}]}
\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
% Add ',fontsize=\small' for more characters per line
\usepackage{framed}
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\newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
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\usepackage{graphicx,grffile}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
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\usepackage{parskip}
}{% else
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}
}
\setlength{\emergencystretch}{3em} % prevent overfull lines
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\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
\setcounter{secnumdepth}{0}
% Redefines (sub)paragraphs to behave more like sections
\ifx\paragraph\undefined\else
\let\oldparagraph\paragraph
\renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
\fi
\ifx\subparagraph\undefined\else
\let\oldsubparagraph\subparagraph
\renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
\fi
% set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
\makeatother
\title{Title}
\author{Matthew Malishev\textsuperscript{1}* \& David J.
Civitello\textsuperscript{1}\\[2\baselineskip]\emph{\textsuperscript{1}
Department of Biology, Emory University, 1510 Clifton Road NE, Atlanta,
GA, USA, 30322}}
\date{}
\begin{document}
\maketitle
{
\hypersetup{linkcolor=black}
\setcounter{tocdepth}{4}
\tableofcontents
}
\newpage
Date: 2019-06-30\\
R version: 3.5.0\\
*Corresponding author:
\href{mailto:matthew.malishev@gmail.com}{\nolinkurl{matthew.malishev@gmail.com}}\\
This document can be found at
\url{https://github.com/darwinanddavis/UsefulCode}
~
R session info
\begin{verbatim}
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 10.11.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0 htmltools_0.3.6 pillar_1.3.1 rstudioapi_0.7 tibble_2.1.1
[7] yaml_2.2.0 crayon_1.3.4 Rcpp_1.0.1 rmarkdown_1.12 knitr_1.22 xfun_0.6
[13] digest_0.6.18 pkgconfig_2.0.2 rlang_0.3.4 evaluate_0.14
\end{verbatim}
\newpage
\subsection{Overview}\label{overview}
This document \ldots{}
\subsubsection{Install dependencies}\label{install-dependencies}
\begin{Shaded}
\begin{Highlighting}[]
\NormalTok{packages <-}\StringTok{ }\KeywordTok{c}\NormalTok{(}\StringTok{"rgdal"}\NormalTok{, }\StringTok{"dplyr"}\NormalTok{, }\StringTok{"zoo"}\NormalTok{, }\StringTok{"RColorBrewer"}\NormalTok{, }\StringTok{"viridis"}\NormalTok{, }\StringTok{"plyr"}\NormalTok{, }\StringTok{"digitize"}\NormalTok{, }\StringTok{"jpeg"}\NormalTok{, }\StringTok{"devtools"}\NormalTok{, }
\StringTok{"imager"}\NormalTok{, }\StringTok{"dplyr"}\NormalTok{, }\StringTok{"ggplot2"}\NormalTok{, }\StringTok{"ggridges"}\NormalTok{, }\StringTok{"ggjoy"}\NormalTok{, }\StringTok{"ggthemes"}\NormalTok{, }\StringTok{"svDialogs"}\NormalTok{, }\StringTok{"data.table"}\NormalTok{, }\StringTok{"tibble"}\NormalTok{, }
\StringTok{"extrafont"}\NormalTok{, }\StringTok{"sp"}\NormalTok{)}
\ControlFlowTok{if}\NormalTok{ (}\KeywordTok{require}\NormalTok{(packages)) \{}
\KeywordTok{install.packages}\NormalTok{(packages, }\DataTypeTok{dependencies =}\NormalTok{ T)}
\KeywordTok{require}\NormalTok{(packages)}
\NormalTok{\}}
\KeywordTok{lapply}\NormalTok{(packages, library, }\DataTypeTok{character.only =}\NormalTok{ T)}
\end{Highlighting}
\end{Shaded}
\subsubsection{Install dependencies}\label{install-dependencies-1}
\begin{verbatim}
'data.frame': 178 obs. of 8 variables:
$ start_lat: num 32.9 42 32.9 18.4 32.9 ...
$ start_lon: num -97 -87.9 -97 -66 -97 ...
$ end_lat : num 35 30.2 41.9 41.9 33.6 ...
$ end_lon : num -106.6 -97.7 -72.7 -72.7 -86.8 ...
$ airline : Factor w/ 1 level "AA": 1 1 1 1 1 1 1 1 1 1 ...
$ airport1 : Factor w/ 57 levels "ATL","AUS","BDL",..: 11 38 11 50 11 32 11 32 38 50 ...
$ airport2 : Factor w/ 58 levels "ABQ","AUS","BDL",..: 1 2 3 3 4 5 6 6 6 6 ...
$ cnt : int 444 166 162 56 168 56 422 392 430 56 ...
\end{verbatim}
\includegraphics{ggmap_mapdeck_files/figure-latex/unnamed-chunk-3-1.pdf}
\printbibliography
\end{document}