version bump on requirements #216

databio · Apr 4, 2024 · 5413eec · 5413eec
1 parent 04abc1f
commit 5413eec
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Showing 4 changed files with 8 additions and 7 deletions.
diff --git a/pypiper/manager.py b/pypiper/manager.py
@@ -52,7 +52,7 @@
     default_pipestat_output_schema,
     result_formatter_markdown,
 )
-from pipestat.helpers import read_yaml_data
+from yacman import load_yaml
 
 __all__ = ["PipelineManager"]
 
@@ -1828,7 +1828,7 @@ def _refresh_stats(self):
         """
 
         if os.path.isfile(self.pipeline_stats_file):
-            _, data = read_yaml_data(path=self.pipeline_stats_file, what="stats_file")
+            data = load_yaml(filepath=self.pipeline_stats_file)
 
             for key, value in data[self._pipestat_manager.pipeline_name][
                 self._pipestat_manager.pipeline_type

diff --git a/pypiper/ngstk.py b/pypiper/ngstk.py
@@ -153,7 +153,8 @@ def get_file_size(self, filenames):
             return sum([self.get_file_size(filename) for filename in filenames])
 
         return round(
-            sum([float(os.stat(f).st_size) for f in filenames.split(" ")]) / (1024**2),
+            sum([float(os.stat(f).st_size) for f in filenames.split(" ")])
+            / (1024**2),
             4,
         )
 

diff --git a/requirements/requirements-docs.txt b/requirements/requirements-docs.txt
@@ -2,5 +2,5 @@ mkdocs>=1.0
 markdown-include
 pydoc-markdown
 piper
-pipestat>=0.6.0
+pipestat>=0.9.0a1
 https://github.com/databio/mkdocs-databio/archive/master.zip
diff --git a/requirements/requirements-pypiper.txt b/requirements/requirements-pypiper.txt
@@ -1,6 +1,6 @@
 logmuse>=0.2.4
 psutil
 pandas
-ubiquerg>=0.4.5
-yacman
-pipestat>=0.6.0
+ubiquerg>=0.8.0
+yacman>=0.9.3
+pipestat>=0.9.0a1