From 5413eecc040da9d41c81959a80cf4049db6a359b Mon Sep 17 00:00:00 2001
From: Donald Campbell <125581724+donaldcampbelljr@users.noreply.github.com>
Date: Thu, 4 Apr 2024 14:00:03 -0400
Subject: [PATCH] version bump on requirements #216

---
 pypiper/manager.py                    | 4 ++--
 pypiper/ngstk.py                      | 3 ++-
 requirements/requirements-docs.txt    | 2 +-
 requirements/requirements-pypiper.txt | 6 +++---
 4 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/pypiper/manager.py b/pypiper/manager.py
index e4e72cb..965945b 100644
--- a/pypiper/manager.py
+++ b/pypiper/manager.py
@@ -52,7 +52,7 @@
     default_pipestat_output_schema,
     result_formatter_markdown,
 )
-from pipestat.helpers import read_yaml_data
+from yacman import load_yaml
 
 __all__ = ["PipelineManager"]
 
@@ -1828,7 +1828,7 @@ def _refresh_stats(self):
         """
 
         if os.path.isfile(self.pipeline_stats_file):
-            _, data = read_yaml_data(path=self.pipeline_stats_file, what="stats_file")
+            data = load_yaml(filepath=self.pipeline_stats_file)
 
             for key, value in data[self._pipestat_manager.pipeline_name][
                 self._pipestat_manager.pipeline_type
diff --git a/pypiper/ngstk.py b/pypiper/ngstk.py
index b607913..329b321 100755
--- a/pypiper/ngstk.py
+++ b/pypiper/ngstk.py
@@ -153,7 +153,8 @@ def get_file_size(self, filenames):
             return sum([self.get_file_size(filename) for filename in filenames])
 
         return round(
-            sum([float(os.stat(f).st_size) for f in filenames.split(" ")]) / (1024**2),
+            sum([float(os.stat(f).st_size) for f in filenames.split(" ")])
+            / (1024**2),
             4,
         )
 
diff --git a/requirements/requirements-docs.txt b/requirements/requirements-docs.txt
index ef5b4e6..9ae381f 100644
--- a/requirements/requirements-docs.txt
+++ b/requirements/requirements-docs.txt
@@ -2,5 +2,5 @@ mkdocs>=1.0
 markdown-include
 pydoc-markdown
 piper
-pipestat>=0.6.0
+pipestat>=0.9.0a1
 https://github.com/databio/mkdocs-databio/archive/master.zip
\ No newline at end of file
diff --git a/requirements/requirements-pypiper.txt b/requirements/requirements-pypiper.txt
index 9a35f34..180ad3d 100644
--- a/requirements/requirements-pypiper.txt
+++ b/requirements/requirements-pypiper.txt
@@ -1,6 +1,6 @@
 logmuse>=0.2.4
 psutil
 pandas
-ubiquerg>=0.4.5
-yacman
-pipestat>=0.6.0
+ubiquerg>=0.8.0
+yacman>=0.9.3
+pipestat>=0.9.0a1