Merge pull request #163 from ttngu207/per-plane-processing

pull from upsteam main
datajoint · Sep 5, 2023 · 8e9178e · 8e9178e
2 parents 40ac3c2 + 328393a
commit 8e9178e
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Showing 4 changed files with 8 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,10 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.8.1] - 2023-08-31
+
++ Fix - Rename `get_image_files` to `get_calcium_imaging_files` where missed
+
 ## [0.8.0] - 2023-08-08
 
 + Update - Rename `get_image_files` to `get_calcium_imaging_files`, and update arguments
@@ -173,6 +177,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - `scan` and `imaging` modules
 + Add - Readers for `ScanImage`, `ScanBox`, `Suite2p`, `CaImAn`
 
+[0.8.1]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.8.1
 [0.8.0]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.8.0
 [0.7.9]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.9
 [0.7.8]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.8

diff --git a/element_calcium_imaging/imaging.py b/element_calcium_imaging/imaging.py
@@ -260,7 +260,7 @@ def infer_output_dir(cls, key, relative=False, mkdir=False):
 
         scan_dir = find_full_path(
             get_imaging_root_data_dir(),
-            get_image_files(key, filetypes[acq_software])[0],
+            get_calcium_imaging_files(key, filetypes[acq_software])[0],
         ).parent
         root_dir = find_root_directory(get_imaging_root_data_dir(), scan_dir)
 

diff --git a/element_calcium_imaging/imaging_no_curation.py b/element_calcium_imaging/imaging_no_curation.py
@@ -260,7 +260,7 @@ def infer_output_dir(cls, key, relative=False, mkdir=False):
 
         scan_dir = find_full_path(
             get_imaging_root_data_dir(),
-            get_image_files(key, filetypes[acq_software])[0],
+            get_calcium_imaging_files(key, filetypes[acq_software])[0],
         ).parent
         root_dir = find_root_directory(get_imaging_root_data_dir(), scan_dir)
 

diff --git a/element_calcium_imaging/imaging_preprocess.py b/element_calcium_imaging/imaging_preprocess.py
@@ -450,7 +450,7 @@ def infer_output_dir(cls, key, relative=False, mkdir=False):
 
         scan_dir = find_full_path(
             get_imaging_root_data_dir(),
-            get_image_files(key, filetypes[acq_software])[0],
+            get_calcium_imaging_files(key, filetypes[acq_software])[0],
         ).parent
         root_dir = find_root_directory(get_imaging_root_data_dir(), scan_dir)