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Per plane processing #161

Merged
merged 27 commits into from
Sep 5, 2023
Merged

Per plane processing #161

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5d71dab
support multiplane processing with CaImAn - per-plane basis
Aug 16, 2023
53a75b8
update pipeline to support per-plane processing with caiman
Aug 23, 2023
34f2351
at Processing - generate new PerPlaneProcessingTask or confirm all P…
Aug 23, 2023
d471a04
Update setup.py
Aug 23, 2023
23e6527
bugfix
Aug 23, 2023
187522b
minor fix
Aug 24, 2023
02e87f0
Update attribute `channel=' '` -> `channel=null`
kushalbakshi Aug 24, 2023
54dbf3a
Update `aggr` function with `.proj()`
kushalbakshi Aug 24, 2023
bfc1125
Update `key_source` for `Processing`
kushalbakshi Aug 24, 2023
b7c9e05
update caiman results ingestion - use latest caiman loader
Aug 25, 2023
a0bb444
Update version.py
Aug 25, 2023
b2961f6
Revert `Processing` ker_source + fix output_dir error
kushalbakshi Aug 25, 2023
6d03f94
Update key_source logic for `Processing`
kushalbakshi Aug 25, 2023
38021f3
Fix for str AttributeError
kushalbakshi Aug 25, 2023
e6d4c5b
Fix TypeError for 'str' and 'str'
kushalbakshi Aug 25, 2023
16d4573
Debug mkdir AttributeError
kushalbakshi Aug 25, 2023
3cb8b70
Update caiman_loader keys for motion correction
kushalbakshi Aug 29, 2023
c12e7bb
Remove mask classification extraction from caiman loader
kushalbakshi Aug 29, 2023
07de08b
Merge branch 'per-plane-processing' of https://github.com/ttngu207/el…
kushalbakshi Aug 29, 2023
a499fed
Add exception to debug summary images
kushalbakshi Aug 29, 2023
9322f77
Refine summary image loading
kushalbakshi Aug 29, 2023
a57a024
Internal variable fkey -> field_key
kushalbakshi Aug 29, 2023
a645be4
Append to summary image list
kushalbakshi Aug 29, 2023
bf48a58
fix incorrect shape in summary images retrieval
Aug 29, 2023
342b86f
Manually merge changes from Thinh's branch
kushalbakshi Aug 30, 2023
e7320b3
Update element_calcium_imaging/imaging_no_curation.py
kushalbakshi Aug 30, 2023
87b180f
Merge pull request #2 from kushalbakshi/per-plane-processing
ttngu207 Aug 30, 2023
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