Melanoma Image Classification with Flask Application

Project Page

Please navigate to this page for the original final report for the project:

https://datascisteven.github.io/Melanoma-Image-Classification

Presentation Link: https://prezi.com/view/JoLKnGuw0ZFBYFZra0c3/

Flask application

While I had been exploring implementation through Flutter for app deployment, Flask seemed much more feasible given my time constraints and level of expertise.

Home page:

The homepage asks for the user to upload a JPEG of any size into the application and to press SUBMIT once done.

Results page:

Upon pressing SUBMIT, you automatically get transferred to the Results page, and you are given a message to get the mole checked out or that it is just another beauty mark. The confidence level of that prediction is also given.

Folder Structure:

├── README.md                   <- the top-level README for reviewers of this project
├── _notebooks					<- folder containing all the project notebooks
│   ├── albumentation.ipynb		<- notebook for displaying augmentations
│   ├── EDA.ipynb				<- notebook for dataset understanding and EDA
│   ├── folders.ipynb			<- notebook for image folder management
│   ├── holdout.ipynb			<- notebook for predicting on holdout sets
│   ├── preaugmentation.ipynb	<- notebook for models with imbalanced dataset
│   ├── postaugmentation.ipynb	<- notebook for models with dataset post-augmentations
│   ├── pretrained.ipynb		<- notebook for pretrained models
│   └── utils.py  				<- py file with self-defined functions
├── final_notebook.ipynb        <- final notebook for capstone project
├── _data                       <- folder of csv files (csv)
├── MVP Presentation.pdf		<- pdf of the MVP presentation
├── _Melanoma-Flask				<- folder with Flask application
└── utils.py					<- py file with self-defined functions

Contact Information:

Steven Yan

Email: stevenyan@uchicago.edu

LinkedIn: https://www.linkedin.com/in/datascisteven

Github: https://www.github.com/datascisteven

References:

International Skin Imaging Collaboration. SIIM-ISIC 2020 Challenge Dataset. International Skin Imaging Collaboration https://doi.org/10.34970/2020-ds01 (2020).

Rotemberg, V. et al. A patient-centric dataset of images and metadata for identifying melanomas using clinical context. Sci. Data 8: 34 (2021). https://doi.org/10.1038/s41597-021-00815-z

ISIC 2019 data is provided courtesy of the following sources:

• BCN20000 Dataset: (c) Department of Dermatology, Hospital Clínic de Barcelona
• HAM10000 Dataset: (c) by ViDIR Group, Department of Dermatology, Medical University of Vienna; https://doi.org/10.1038/sdata.2018.161
• MSK Dataset: (c) Anonymous; https://arxiv.org/abs/1710.05006 ; https://arxiv.org/abs/1902.03368

Tschandl, P. et al. The HAM10000 dataset, a large collection of multi-source dermatoscopic images of common pigmented skin lesions. Sci. Data 5: 180161 doi: 10.1038/sdata.2018.161 (2018)

Codella, N. et al. “Skin Lesion Analysis Toward Melanoma Detection: A Challenge at the 2017 International Symposium on Biomedical Imaging (ISBI), Hosted by the International Skin Imaging Collaboration (ISIC)”, 2017; arXiv:1710.05006.

Marc Combalia, Noel C. F. Codella, Veronica Rotemberg, Brian Helba, Veronica Vilaplana, Ofer Reiter, Allan C. Halpern, Susana Puig, Josep Malvehy: “BCN20000: Dermoscopic Lesions in the Wild”, 2019; arXiv:1908.02288.

Codella, N. et al. “Skin Lesion Analysis Toward Melanoma Detection 2018: A Challenge Hosted by the International Skin Imaging Collaboration (ISIC)”, 2018; https://arxiv.org/abs/1902.03368