forked from bp-kelley/descriptastorus
-
Notifications
You must be signed in to change notification settings - Fork 0
/
setup.py
92 lines (83 loc) · 3.41 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
#!/usr/bin/env python
# Copyright (c) 2018, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above
# copyright notice, this list of conditions and the following
# disclaimer in the documentation and/or other materials provided
# with the distribution.
# * Neither the name of Novartis Institutes for BioMedical Research Inc.
# nor the names of its contributors may be used to endorse or promote
# products derived from this software without specific prior written
# permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
import os, sys
from setuptools import setup, find_packages
try:
from commands import getstatusoutput
except ImportError:
from subprocess import getstatusoutput
import logging
status, output = getstatusoutput("git describe --tags")
if not status:
try:
data = output.split("-")
if len(data) == 1:
VERSION = data[0]
elif data and data[0].lower() == "release":
VERSION = "%s.%s" % (data[1], data[2])
else:
VERSION = "%s.%s" % (data[0], data[1])
except:
raise RuntimeError("git tags must be in the form release-x.y.z or simply x.y.z")
directory = os.path.dirname(sys.argv[1])
lines = []
path = os.path.join(directory, "descriptastorus", "__init__.py")
with open(path) as fn:
for line in fn:
if line.find("__version__") == 0:
lines.append(f'__version__ = "{VERSION}"\n')
else:
lines.append(line)
with open(path, 'w') as w:
w.write("".join(lines))
else:
logging.error("Could not run git to get version information... using hard coded version which is likely incorrect")
VERSION = "2.6.0" # hardcode version
setup(
name="descriptastorus",
version=VERSION,
description="Descriptor storage and molecular file indexing",
author="Brian Kelley",
author_email="bkelley@relaytx.com",
url="git@github.com:bp-kelley/descriptastorus.git",
install_requires=["pandas_flavor"],
test_suite="nose.collector",
tests_require=["nose", "pandas_flavor"],
include_package_data=True,
entry_points={
"console_scripts": [
"storus = descriptastorus.cli.storus:main",
"storus-validate = descriptastorus.cli.validate:main",
]
},
packages=find_packages(),
)