From 7dc40d57d173238b3141ce2c6f19e3d74a93daf2 Mon Sep 17 00:00:00 2001 From: Michele Date: Wed, 29 Mar 2023 17:30:30 -0400 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b96f2c7..023312d 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ This repository contains components for the CGAP pipeline for Single Nucleotide * CWL workflow descriptions * CGAP Portal *Workflow* and *MetaWorkflow* objects * CGAP Portal *Software*, *FileFormat*, and *FileReference* objects - * ECR (Docker) source files, which allow for creation of public Docker images (using `docker build`) or private dynamically-generated ECR images (using [*cgap pipeline utils*](https://github.com/dbmi-bgm/cgap-pipeline-utils/) `pipeline_deploy`) + * ECR (Docker) source files, which allow for creation of public Docker images (using `docker build`) or private dynamically-generated ECR images (using [*portal pipeline utils*](https://github.com/dbmi-bgm/portal-pipeline-utils/) `pipeline_deploy`) The pipeline starts from tumor/normal `vcf` files and produces filtered and annotated `vcf` files containing SNVs and small INDELs as output. It also prioritizes and annotates putative driver mutations applying the decision tree developed by Hartwig Medical Foundation.