diff --git a/poetry.lock b/poetry.lock
index d861176454..58b65c8cac 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
 
 [[package]]
 name = "apipkg"
 version = "3.0.1"
 description = "apipkg: namespace control and lazy-import mechanism"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -16,7 +15,6 @@ files = [
 name = "async-timeout"
 version = "4.0.2"
 description = "Timeout context manager for asyncio programs"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -28,7 +26,6 @@ files = [
 name = "aws-requests-auth"
 version = "0.4.3"
 description = "AWS signature version 4 signing process for the python requests module"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -43,7 +40,6 @@ requests = ">=0.14.0"
 name = "awscli"
 version = "1.27.133"
 description = "Universal Command Line Environment for AWS."
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -63,7 +59,6 @@ s3transfer = ">=0.6.0,<0.7.0"
 name = "beautifulsoup4"
 version = "4.12.2"
 description = "Screen-scraping library"
-category = "main"
 optional = false
 python-versions = ">=3.6.0"
 files = [
@@ -82,7 +77,6 @@ lxml = ["lxml"]
 name = "bitarray"
 version = "2.7.3"
 description = "efficient arrays of booleans -- C extension"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -179,7 +173,6 @@ files = [
 name = "boto3"
 version = "1.26.133"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -199,7 +192,6 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 name = "boto3-stubs"
 version = "1.26.117"
 description = "Type annotations for boto3 1.26.117 generated with mypy-boto3-builder 7.14.5"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -564,7 +556,6 @@ xray = ["mypy-boto3-xray (>=1.26.0,<1.27.0)"]
 name = "botocore"
 version = "1.29.133"
 description = "Low-level, data-driven core of boto 3."
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -584,7 +575,6 @@ crt = ["awscrt (==0.16.9)"]
 name = "botocore-stubs"
 version = "1.29.117"
 description = "Type annotations and code completion for botocore"
-category = "dev"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -598,21 +588,19 @@ typing-extensions = {version = ">=4.1.0", markers = "python_version < \"3.9\""}
 
 [[package]]
 name = "certifi"
-version = "2022.12.7"
+version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"},
-    {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"},
+    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
+    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
 ]
 
 [[package]]
 name = "cffi"
 version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -689,7 +677,6 @@ pycparser = "*"
 name = "chardet"
 version = "3.0.4"
 description = "Universal encoding detector for Python 2 and 3"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -701,7 +688,6 @@ files = [
 name = "charset-normalizer"
 version = "3.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -786,7 +772,6 @@ files = [
 name = "click"
 version = "8.1.3"
 description = "Composable command line interface toolkit"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -801,7 +786,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codacy-coverage"
 version = "1.3.11"
 description = "Codacy coverage reporter for Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -820,7 +804,6 @@ test = ["coverage", "nosetests"]
 name = "codeguru-profiler-agent"
 version = "1.2.4"
 description = "The Python agent to be used for Amazon CodeGuru Profiler"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -835,7 +818,6 @@ boto3 = ">=1.14.0"
 name = "colorama"
 version = "0.3.3"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -846,7 +828,6 @@ files = [
 name = "coverage"
 version = "6.5.0"
 description = "Code coverage measurement for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -912,7 +893,6 @@ toml = ["tomli"]
 name = "coveralls"
 version = "3.3.1"
 description = "Show coverage stats online via coveralls.io"
-category = "dev"
 optional = false
 python-versions = ">= 3.5"
 files = [
@@ -921,7 +901,7 @@ files = [
 ]
 
 [package.dependencies]
-coverage = ">=4.1,<6.0.0 || >6.1,<6.1.1 || >6.1.1,<7.0"
+coverage = ">=4.1,<6.0.dev0 || >6.1,<6.1.1 || >6.1.1,<7.0"
 docopt = ">=0.6.1"
 requests = ">=1.0.0"
 
@@ -932,7 +912,6 @@ yaml = ["PyYAML (>=3.10)"]
 name = "cryptography"
 version = "39.0.2"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -978,7 +957,6 @@ tox = ["tox"]
 name = "cycler"
 version = "0.11.0"
 description = "Composable style cycles"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -990,7 +968,6 @@ files = [
 name = "cython"
 version = "0.29.34"
 description = "The Cython compiler for writing C extensions for the Python language."
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1040,7 +1017,6 @@ files = [
 name = "dcicpyvcf"
 version = "1.0.0.1b0"
 description = "Variant Call Format (VCF) parser for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1054,7 +1030,6 @@ setuptools = "*"
 name = "dcicsnovault"
 version = "9.0.0"
 description = "Storage support for 4DN Data Portals."
-category = "main"
 optional = false
 python-versions = ">=3.8.1,<3.10"
 files = [
@@ -1111,7 +1086,6 @@ xlrd = ">=1.0.0,<2.0.0"
 name = "dcicutils"
 version = "7.5.1"
 description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
-category = "main"
 optional = false
 python-versions = ">=3.7,<3.10"
 files = [
@@ -1145,7 +1119,6 @@ webtest = ">=2.0.34,<3.0.0"
 name = "docker"
 version = "4.4.4"
 description = "A Python library for the Docker Engine API."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1167,7 +1140,6 @@ tls = ["cryptography (>=1.3.4)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1178,7 +1150,6 @@ files = [
 name = "docutils"
 version = "0.16"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1190,7 +1161,6 @@ files = [
 name = "elasticsearch"
 version = "7.13.4"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
 files = [
@@ -1212,7 +1182,6 @@ requests = ["requests (>=2.4.0,<3.0.0)"]
 name = "elasticsearch-dsl"
 version = "7.4.1"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1232,7 +1201,6 @@ develop = ["coverage (<5.0.0)", "mock", "pytest (>=3.0.0)", "pytest-cov", "pytes
 name = "et-xmlfile"
 version = "1.1.0"
 description = "An implementation of lxml.xmlfile for the standard library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1244,7 +1212,6 @@ files = [
 name = "exceptiongroup"
 version = "1.1.1"
 description = "Backport of PEP 654 (exception groups)"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1259,7 +1226,6 @@ test = ["pytest (>=6)"]
 name = "execnet"
 version = "1.4.1"
 description = "execnet: rapid multi-Python deployment"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1274,7 +1240,6 @@ apipkg = ">=1.4"
 name = "flake8"
 version = "6.0.0"
 description = "the modular source code checker: pep8 pyflakes and co"
-category = "dev"
 optional = false
 python-versions = ">=3.8.1"
 files = [
@@ -1291,7 +1256,6 @@ pyflakes = ">=3.0.0,<3.1.0"
 name = "flaky"
 version = "3.7.0"
 description = "Plugin for nose or pytest that automatically reruns flaky tests."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1303,7 +1267,6 @@ files = [
 name = "flask"
 version = "2.1.3"
 description = "A simple framework for building complex web applications."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1326,7 +1289,6 @@ dotenv = ["python-dotenv"]
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1337,7 +1299,6 @@ files = [
 name = "gitdb"
 version = "4.0.10"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1352,7 +1313,6 @@ smmap = ">=3.0.1,<6"
 name = "gitpython"
 version = "3.1.31"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1367,7 +1327,6 @@ gitdb = ">=4.0.1,<5"
 name = "granite-suite"
 version = "0.1.11b0"
 description = "granite is a collection of software to call, filter and work with genomic variants"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1387,7 +1346,6 @@ pytabix = ">=0.0.2"
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -1461,7 +1419,6 @@ test = ["objgraph", "psutil"]
 name = "h5py"
 version = "3.8.0"
 description = "Read and write HDF5 files from Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1499,7 +1456,6 @@ numpy = ">=1.14.5"
 name = "html5lib"
 version = "1.1"
 description = "HTML parser based on the WHATWG HTML specification"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1521,7 +1477,6 @@ lxml = ["lxml"]
 name = "humanfriendly"
 version = "1.44.9"
 description = "Human friendly output for text interfaces using Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1533,7 +1488,6 @@ files = [
 name = "hupper"
 version = "1.5"
 description = "Integrated process monitor for developing and reloading daemons."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -1549,7 +1503,6 @@ testing = ["mock", "pytest", "pytest-cov", "watchdog"]
 name = "idna"
 version = "2.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1561,7 +1514,6 @@ files = [
 name = "importlib-metadata"
 version = "6.5.0"
 description = "Read metadata from Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1581,7 +1533,6 @@ testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packag
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1593,7 +1544,6 @@ files = [
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1608,7 +1558,6 @@ six = "*"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1620,7 +1569,6 @@ files = [
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1638,7 +1586,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "0.10.0"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1650,7 +1597,6 @@ files = [
 name = "jsonschema-serialize-fork"
 version = "2.1.1"
 description = "Fork of Julian Berman's jsonschema to include support for serializing defaults"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1661,7 +1607,6 @@ files = [
 name = "kiwisolver"
 version = "1.4.4"
 description = "A fast implementation of the Cassowary constraint solver"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1739,7 +1684,6 @@ files = [
 name = "markupsafe"
 version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1799,7 +1743,6 @@ files = [
 name = "matplotlib"
 version = "3.3.4"
 description = "Python plotting package"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1842,7 +1785,6 @@ python-dateutil = ">=2.1"
 name = "mccabe"
 version = "0.7.0"
 description = "McCabe checker, plugin for flake8"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1854,7 +1796,6 @@ files = [
 name = "moto"
 version = "4.0.3"
 description = "A library that allows your python tests to easily mock out the boto library"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1903,7 +1844,6 @@ xray = ["aws-xray-sdk (>=0.93,!=0.96)", "setuptools"]
 name = "negspy"
 version = "0.2.24"
 description = "Python NGS tools"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1914,7 +1854,6 @@ files = [
 name = "netaddr"
 version = "0.8.0"
 description = "A network address manipulation library for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1926,7 +1865,6 @@ files = [
 name = "numpy"
 version = "1.24.2"
 description = "Fundamental package for array computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1964,7 +1902,6 @@ files = [
 name = "openpyxl"
 version = "3.1.2"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1979,7 +1916,6 @@ et-xmlfile = "*"
 name = "opensearch-py"
 version = "2.2.0"
 description = "Python client for OpenSearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
 files = [
@@ -2004,7 +1940,6 @@ kerberos = ["requests-kerberos"]
 name = "packaging"
 version = "23.1"
 description = "Core utilities for Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2016,7 +1951,6 @@ files = [
 name = "passlib"
 version = "1.7.4"
 description = "comprehensive password hashing framework supporting over 30 schemes"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2034,7 +1968,6 @@ totp = ["cryptography"]
 name = "pastedeploy"
 version = "1.5.2"
 description = "Load, configure, and compose WSGI applications and servers"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2049,7 +1982,6 @@ paste = ["Paste"]
 name = "pbkdf2"
 version = "1.3"
 description = "PKCS#5 v2.0 PBKDF2 Module"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2060,7 +1992,6 @@ files = [
 name = "pillow"
 version = "9.5.0"
 description = "Python Imaging Library (Fork)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2140,7 +2071,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 name = "pip-licenses"
 version = "3.5.5"
 description = "Dump the software license list of Python packages installed with pip."
-category = "dev"
 optional = false
 python-versions = "~=3.7"
 files = [
@@ -2158,7 +2088,6 @@ test = ["docutils", "pytest-cov", "pytest-pycodestyle", "pytest-runner"]
 name = "pipdeptree"
 version = "2.7.0"
 description = "Command line utility to show dependency tree of packages."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2174,7 +2103,6 @@ test = ["covdefaults (>=2.3)", "diff-cover (>=7.5)", "pip (>=23.0.1)", "pytest (
 name = "plaster"
 version = "1.0"
 description = "A loader interface around multiple config file formats."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2193,7 +2121,6 @@ testing = ["pytest", "pytest-cov"]
 name = "plaster-pastedeploy"
 version = "0.6"
 description = "A loader implementing the PasteDeploy syntax to be used by plaster."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2212,7 +2139,6 @@ testing = ["pytest", "pytest-cov"]
 name = "pluggy"
 version = "1.0.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2228,7 +2154,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "psutil"
 version = "5.9.5"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2255,7 +2180,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 name = "psycopg2"
 version = "2.9.6"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2278,7 +2202,6 @@ files = [
 name = "psycopg2-binary"
 version = "2.9.6"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2350,7 +2273,6 @@ files = [
 name = "ptable"
 version = "0.9.2"
 description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2361,7 +2283,6 @@ files = [
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2373,7 +2294,6 @@ files = [
 name = "pyasn1"
 version = "0.1.9"
 description = "ASN.1 types and codecs"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2385,7 +2305,6 @@ files = [
 name = "pybrowserid"
 version = "0.14.0"
 description = "Python library for the BrowserID Protocol"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2400,7 +2319,6 @@ requests = "*"
 name = "pycodestyle"
 version = "2.10.0"
 description = "Python style guide checker"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2412,7 +2330,6 @@ files = [
 name = "pycparser"
 version = "2.14"
 description = "C parser in Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2423,7 +2340,6 @@ files = [
 name = "pyflakes"
 version = "3.0.1"
 description = "passive checker of Python programs"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2435,7 +2351,6 @@ files = [
 name = "pyjwt"
 version = "2.7.0"
 description = "JSON Web Token implementation in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2453,7 +2368,6 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pyopenssl"
 version = "23.1.1"
 description = "Python wrapper module around the OpenSSL library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2472,7 +2386,6 @@ test = ["flaky", "pretend", "pytest (>=3.0.1)"]
 name = "pyparsing"
 version = "3.0.9"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -2487,7 +2400,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pyramid"
 version = "1.10.4"
 description = "The Pyramid Web Framework, a Pylons project"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2514,7 +2426,6 @@ testing = ["coverage", "nose", "virtualenv", "webtest (>=1.3.1)", "zope.componen
 name = "pyramid-multiauth"
 version = "0.9.0"
 description = "pyramid_multiauth"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2529,7 +2440,6 @@ pyramid = "*"
 name = "pyramid-retry"
 version = "1.0"
 description = "An execution policy for Pyramid that supports retrying requests after certain failure exceptions."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2549,7 +2459,6 @@ testing = ["WebTest", "pytest", "pytest-cov"]
 name = "pyramid-tm"
 version = "2.5"
 description = "A package which allows Pyramid requests to join the active transaction"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2569,7 +2478,6 @@ testing = ["WebTest", "coverage (>=5.0)", "pytest", "pytest-cov"]
 name = "pyramid-translogger"
 version = "0.1"
 description = "access log logger tween (almost stolen from Paste.translogger)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2583,7 +2491,6 @@ setuptools = "*"
 name = "pysam"
 version = "0.21.0"
 description = "pysam - a python module for reading, manipulating and writing genomic data sets."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2617,7 +2524,6 @@ cython = "*"
 name = "pytabix"
 version = "0.1"
 description = "Python interface for tabix"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2628,7 +2534,6 @@ files = [
 name = "pytest"
 version = "7.3.1"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2651,7 +2556,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
 name = "pytest-cov"
 version = "4.0.0"
 description = "Pytest plugin for measuring coverage."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2670,7 +2574,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
 name = "pytest-instafail"
 version = "0.5.0"
 description = "pytest plugin to show failures instantly"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2685,7 +2588,6 @@ pytest = ">=5"
 name = "pytest-mock"
 version = "3.10.0"
 description = "Thin-wrapper around the mock package for easier use with pytest"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2703,7 +2605,6 @@ dev = ["pre-commit", "pytest-asyncio", "tox"]
 name = "pytest-timeout"
 version = "2.1.0"
 description = "pytest plugin to abort hanging tests"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2718,7 +2619,6 @@ pytest = ">=5.0.0"
 name = "pytest-xdist"
 version = "3.1.0"
 description = "pytest xdist plugin for distributed testing, most importantly across multiple CPUs"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2739,7 +2639,6 @@ testing = ["filelock"]
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2754,7 +2653,6 @@ six = ">=1.5"
 name = "python-magic"
 version = "0.4.27"
 description = "File type identification using libmagic"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2766,7 +2664,6 @@ files = [
 name = "pytz"
 version = "2023.3"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2778,7 +2675,6 @@ files = [
 name = "pywin32"
 version = "227"
 description = "Python for Window Extensions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2800,7 +2696,6 @@ files = [
 name = "pyyaml"
 version = "5.3.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2823,7 +2718,6 @@ files = [
 name = "rdflib"
 version = "4.2.2"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2843,7 +2737,6 @@ sparql = ["SPARQLWrapper"]
 name = "rdflib-jsonld"
 version = "0.6.0"
 description = "rdflib extension adding JSON-LD parser and serializer"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2858,7 +2751,6 @@ rdflib = "*"
 name = "redis"
 version = "4.5.5"
 description = "Python client for Redis database and key-value store"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2877,7 +2769,6 @@ ocsp = ["cryptography (>=36.0.1)", "pyopenssl (==20.0.1)", "requests (>=2.26.0)"
 name = "repoze-debug"
 version = "1.1"
 description = "Forensic debugging WSGI middleware"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2896,7 +2787,6 @@ testing = ["WebOb", "coverage", "nose"]
 name = "requests"
 version = "2.28.2"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7, <4"
 files = [
@@ -2918,7 +2808,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "responses"
 version = "0.23.1"
 description = "A utility library for mocking out the `requests` Python library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2939,7 +2828,6 @@ tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=7.0.0)", "pytest-asy
 name = "rfc3986"
 version = "1.5.0"
 description = "Validating URI References per RFC 3986"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2954,7 +2842,6 @@ idna2008 = ["idna"]
 name = "rsa"
 version = "3.3"
 description = "Pure-Python RSA implementation"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2969,7 +2856,6 @@ pyasn1 = ">=0.1.3"
 name = "rutter"
 version = "0.4"
 description = "Py3k-compatible fork of Paste's urlmap"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2987,7 +2873,6 @@ testing = ["WebTest", "coverage", "pytest", "pytest-cov"]
 name = "s3transfer"
 version = "0.6.0"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -3005,7 +2890,6 @@ crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"]
 name = "sentry-sdk"
 version = "1.20.0"
 description = "Python client for Sentry (https://sentry.io)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3047,7 +2931,6 @@ tornado = ["tornado (>=5)"]
 name = "setuptools"
 version = "68.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3064,7 +2947,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (
 name = "simplejson"
 version = "3.19.1"
 description = "Simple, fast, extensible JSON encoder/decoder for Python"
-category = "main"
 optional = false
 python-versions = ">=2.5, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3159,7 +3041,6 @@ files = [
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3171,7 +3052,6 @@ files = [
 name = "smmap"
 version = "5.0.0"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3183,7 +3063,6 @@ files = [
 name = "soupsieve"
 version = "2.4.1"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3195,7 +3074,6 @@ files = [
 name = "sparqlwrapper"
 version = "1.8.5"
 description = "SPARQL Endpoint interface to Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3214,7 +3092,6 @@ keepalive = ["keepalive (>=0.5)"]
 name = "sqlalchemy"
 version = "1.4.41"
 description = "Database Abstraction Library"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -3262,7 +3139,7 @@ files = [
 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\")"}
 
 [package.extras]
 aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
@@ -3289,7 +3166,6 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "structlog"
 version = "19.2.0"
 description = "Structured Logging for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3310,7 +3186,6 @@ tests = ["coverage", "freezegun (>=0.2.8)", "pretend", "pytest (>=3.3.0)", "pyth
 name = "subprocess-middleware"
 version = "0.3"
 description = "Subprocess WSGI middleware and Pyramid tween."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3327,7 +3202,6 @@ test = ["WebTest", "pyramid", "pytest"]
 name = "supervisor"
 version = "4.2.5"
 description = "A system for controlling process state under UNIX"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3345,7 +3219,6 @@ testing = ["pytest", "pytest-cov"]
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3357,7 +3230,6 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3369,7 +3241,6 @@ files = [
 name = "tqdm"
 version = "4.65.0"
 description = "Fast, Extensible Progress Meter"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3390,7 +3261,6 @@ telegram = ["requests"]
 name = "transaction"
 version = "3.1.0"
 description = "Transaction management for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -3410,7 +3280,6 @@ testing = ["coverage", "mock", "nose"]
 name = "translationstring"
 version = "1.3"
 description = "Utility library for i18n relied on by various Repoze and Pyramid packages"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3422,7 +3291,6 @@ files = [
 name = "types-awscrt"
 version = "0.16.15"
 description = "Type annotations and code completion for awscrt"
-category = "dev"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -3434,7 +3302,6 @@ files = [
 name = "types-pyyaml"
 version = "6.0.12.9"
 description = "Typing stubs for PyYAML"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -3446,7 +3313,6 @@ files = [
 name = "types-s3transfer"
 version = "0.6.0.post7"
 description = "Type annotations and code completion for s3transfer"
-category = "dev"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -3461,7 +3327,6 @@ types-awscrt = "*"
 name = "typing-extensions"
 version = "4.5.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3473,7 +3338,6 @@ files = [
 name = "uptime"
 version = "3.0.1"
 description = "Cross-platform uptime library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3484,7 +3348,6 @@ files = [
 name = "urllib3"
 version = "1.26.15"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -3501,7 +3364,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "venusian"
 version = "1.2.0"
 description = "A library for deferring decorator actions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3517,7 +3379,6 @@ testing = ["coverage", "pytest", "pytest-cov"]
 name = "waitress"
 version = "2.1.2"
 description = "Waitress WSGI server"
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -3533,7 +3394,6 @@ testing = ["coverage (>=5.0)", "pytest", "pytest-cover"]
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3545,7 +3405,6 @@ files = [
 name = "webob"
 version = "1.8.7"
 description = "WSGI request and response object"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*"
 files = [
@@ -3561,7 +3420,6 @@ testing = ["coverage", "pytest (>=3.1.0)", "pytest-cov", "pytest-xdist"]
 name = "websocket-client"
 version = "1.5.1"
 description = "WebSocket client for Python with low level API options"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3578,7 +3436,6 @@ test = ["websockets"]
 name = "webtest"
 version = "2.0.35"
 description = "Helper to test WSGI applications"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3600,7 +3457,6 @@ tests = ["PasteDeploy", "WSGIProxy2", "coverage", "mock", "nose (<1.3.0)", "pyqu
 name = "werkzeug"
 version = "2.1.2"
 description = "The comprehensive WSGI web application library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3615,7 +3471,6 @@ watchdog = ["watchdog"]
 name = "wheel"
 version = "0.40.0"
 description = "A built-package format for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3630,7 +3485,6 @@ test = ["pytest (>=6.0.0)"]
 name = "wsgiproxy2"
 version = "0.4.2"
 description = "UNKNOWN"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3645,7 +3499,6 @@ webob = "*"
 name = "xlrd"
 version = "1.2.0"
 description = "Library for developers to extract data from Microsoft Excel (tm) spreadsheet files"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -3657,7 +3510,6 @@ files = [
 name = "xmltodict"
 version = "0.13.0"
 description = "Makes working with XML feel like you are working with JSON"
-category = "dev"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -3669,7 +3521,6 @@ files = [
 name = "zipp"
 version = "3.15.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3685,7 +3536,6 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more
 name = "zope-deprecation"
 version = "4.4.0"
 description = "Zope Deprecation Infrastructure"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3704,7 +3554,6 @@ test = ["zope.testrunner"]
 name = "zope-interface"
 version = "5.5.2"
 description = "Interfaces for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -3758,7 +3607,6 @@ testing = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
 name = "zope-sqlalchemy"
 version = "1.6"
 description = "Minimal Zope/SQLAlchemy transaction integration"
-category = "main"
 optional = false
 python-versions = "*"
 files = [