From 2d29afde7b67fd26c92e7a780e5e822d760c3105 Mon Sep 17 00:00:00 2001 From: David Michaels Date: Thu, 21 Sep 2023 12:41:24 -0400 Subject: [PATCH] Update dcicutils and awscli and magma-suite versions --- poetry.lock | 201 +++++++++++++++++++++++++------------------------ pyproject.toml | 6 +- 2 files changed, 107 insertions(+), 100 deletions(-) diff --git a/poetry.lock b/poetry.lock index 83ac449..03009f8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -80,6 +80,17 @@ soupsieve = ">1.2" html5lib = ["html5lib"] lxml = ["lxml"] +[[package]] +name = "benchmark-4dn" +version = "0.5.23" +description = "Benchmark functions that returns total space, mem, cpu given input size and parameters for the CWL workflows" +optional = false +python-versions = ">=3.5,<4.0" +files = [ + {file = "Benchmark-4dn-0.5.23.tar.gz", hash = "sha256:f17a02c5cd9669f96ea65cb31603106bb77a0a01775b4fd2983a95ab66ee7b7c"}, + {file = "benchmark_4dn-0.5.23-py3-none-any.whl", hash = "sha256:bd8aa8c252e868f1d7afa2c2003e1148f409e6dc825af5656f37cd5fec30e2c3"}, +] + [[package]] name = "boto3" version = "1.28.52" @@ -207,88 +218,18 @@ pycparser = "*" [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "2.0.12" description = "The Real First Universal Charset Detector. 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Use to package and deploy lambda functions." +optional = false +python-versions = "*" +files = [ + {file = "python-lambda-4dn-0.12.3.tar.gz", hash = "sha256:41765ea05224c035e146c89d60ef23d0d2c043ccc79e380cbeae60143547b1dc"}, + {file = "python_lambda_4dn-0.12.3-py2.py3-none-any.whl", hash = "sha256:a87fd330fcf6702165904dbe884610df5bf029c55cd2cc176d22f788b04a5f21"}, +] + +[package.dependencies] +boto3 = ">=1.7.42" +botocore = ">=1.10.42" +docutils = ">=0.14" + [[package]] name = "pytz" version = "2023.3.post1" @@ -848,24 +807,24 @@ rpds-py = ">=0.7.0" [[package]] name = "requests" -version = "2.31.0" +version = "2.27.1" description = "Python HTTP for Humans." optional = false -python-versions = ">=3.7" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ - {file = "requests-2.31.0-py3-none-any.whl", hash = "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f"}, - {file = "requests-2.31.0.tar.gz", hash = "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"}, + {file = "requests-2.27.1-py2.py3-none-any.whl", hash = "sha256:f22fa1e554c9ddfd16e6e41ac79759e17be9e492b3587efa038054674760e72d"}, + {file = "requests-2.27.1.tar.gz", hash = "sha256:68d7c56fd5a8999887728ef304a6d12edc7be74f1cfa47714fc8b414525c9a61"}, ] [package.dependencies] certifi = ">=2017.4.17" -charset-normalizer = ">=2,<4" -idna = ">=2.5,<4" -urllib3 = ">=1.21.1,<3" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} +urllib3 = ">=1.21.1,<1.27" [package.extras] -socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "rfc3986" @@ -1071,6 +1030,43 @@ dev = ["coverage", "freezegun (>=0.2.8)", "pre-commit", "pretend", "pytest (>=3. docs = ["sphinx", "twisted"] tests = ["coverage", "freezegun (>=0.2.8)", "pretend", "pytest (>=3.3.0)", "python-rapidjson", "simplejson"] +[[package]] +name = "tibanna" +version = "4.0.0.1b2" +description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud." +optional = false +python-versions = ">=3.8,<3.12" +files = [ + {file = "tibanna-4.0.0.1b2-py3-none-any.whl", hash = "sha256:bc7f52cbe53c6b723d1650939afeaa46765893986d1760074d32d4aafe9967e7"}, + {file = "tibanna-4.0.0.1b2.tar.gz", hash = "sha256:2565aa7da5d2ef55558fda69a02f3dac9dbe559a8f504fca107dbe072eec0d40"}, +] + +[package.dependencies] +Benchmark-4dn = ">=0.5.23,<0.6.0" +boto3 = ">=1.28.51,<2.0.0" +botocore = ">=1.31.51,<2.0.0" +python-lambda-4dn = "0.12.3" +tomlkit = ">=0.11.0,<0.12.0" + +[[package]] +name = "tibanna-ff" +version = "2.0.1.1b5" +description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud." +optional = false +python-versions = ">=3.8,<3.12" +files = [ + {file = "tibanna_ff-2.0.1.1b5-py3-none-any.whl", hash = "sha256:5e3b68e77a9d9350fc10f8a54ac43f80d0007a823cac12d972fd9889eaad716b"}, + {file = "tibanna_ff-2.0.1.1b5.tar.gz", hash = "sha256:064a4f0d8b30e758e7983df6507fdeeb725b82264320a89cef10505e20540898"}, +] + +[package.dependencies] +boto3 = ">=1.28.51,<2.0.0" +botocore = ">=1.31.51,<2.0.0" +dcicutils = "7.12.0.1b5" +requests = "2.27.1" +tibanna = "4.0.0.1b2" +tomlkit = ">=0.11.0,<0.12.0" + [[package]] name = "toml" version = "0.10.2" @@ -1093,6 +1089,17 @@ files = [ {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"}, ] +[[package]] +name = "tomlkit" +version = "0.11.8" +description = "Style preserving TOML library" +optional = false +python-versions = ">=3.7" +files = [ + {file = "tomlkit-0.11.8-py3-none-any.whl", hash = "sha256:8c726c4c202bdb148667835f68d68780b9a003a9ec34167b6c673b38eff2a171"}, + {file = "tomlkit-0.11.8.tar.gz", hash = "sha256:9330fc7faa1db67b541b28e62018c17d20be733177d290a13b24c62d1614e0c3"}, +] + [[package]] name = "tqdm" version = "4.66.1" @@ -1225,4 +1232,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "080b1fb24e71a31c971c4c16a3f35e0f80f55629ba0a26f4f4029212b4e8d905" +content-hash = "3ffa08efbefd5e4907f28b0910e77445558f4106375597c10e6d428382af8074" diff --git a/pyproject.toml b/pyproject.toml index fb32a6f..f464da2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,11 +22,11 @@ packages = [ [tool.poetry.dependencies] python = ">=3.8,<3.12" -dcicutils = "7.12.0.1b1" +dcicutils = "7.12.0.1b5" boto3 = "^1.28.51" -awscli = "^1.22.15" +awscli = "^1.29.52" jsonschema = "^4.7.2" -magma-suite = "1.5.0.1b2" +magma-suite = "1.5.0.3b1" [tool.poetry.dev-dependencies]