From 99cc267a88f6137d81c51cfa9352fc441200be69 Mon Sep 17 00:00:00 2001 From: David Michaels Date: Tue, 26 Sep 2023 15:09:10 -0400 Subject: [PATCH] update dcicutils and magma versions --- poetry.lock | 64 +++++++++++++++++++++++++------------------------- pyproject.toml | 10 ++++---- 2 files changed, 37 insertions(+), 37 deletions(-) diff --git a/poetry.lock b/poetry.lock index 03009f8..d34a51b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -45,17 +45,17 @@ requests = ">=0.14.0" [[package]] name = "awscli" -version = "1.29.52" +version = "1.29.54" description = "Universal Command Line Environment for AWS." optional = false python-versions = ">= 3.7" files = [ - {file = "awscli-1.29.52-py3-none-any.whl", hash = "sha256:dcbf7d67d1b89069bf287f422a7a62b7747773377f04de2bb4105c41977119e5"}, - {file = "awscli-1.29.52.tar.gz", hash = "sha256:211b6703d8dfb696ab3d8199a94a227819a62bed6337f3caab7339099a4475a8"}, + {file = "awscli-1.29.54-py3-none-any.whl", hash = "sha256:53531f3625bb5a586c4a8fefac0247e3cc92bb59ddbcad90b61a66efe6b8a788"}, + {file = "awscli-1.29.54.tar.gz", hash = "sha256:de6e406749d69b1d01602100534a1d72dcd001200d1434296f3f8d2514f8a030"}, ] [package.dependencies] -botocore = "1.31.52" +botocore = "1.31.54" colorama = ">=0.2.5,<0.4.5" docutils = ">=0.10,<0.17" PyYAML = ">=3.10,<6.1" @@ -93,17 +93,17 @@ files = [ [[package]] name = "boto3" -version = "1.28.52" +version = "1.28.54" description = "The AWS SDK for Python" optional = false python-versions = ">= 3.7" files = [ - {file = "boto3-1.28.52-py3-none-any.whl", hash = "sha256:1d36db102517d62c6968b3b0636303241f56859d12dd071def4882fc6e030b20"}, - {file = "boto3-1.28.52.tar.gz", hash = "sha256:a34fc153cb2f6fb2f79a764286c967392e8aae9412381d943bddc576c4f7631a"}, + {file = "boto3-1.28.54-py3-none-any.whl", hash = "sha256:3cb2aee317a1b8686e3b23674e4099b8ff7451bd8acc61b9719acff86fa024d1"}, + {file = "boto3-1.28.54.tar.gz", hash = "sha256:22e37d8c4f2d97b5e5c6ccc1d9edc7760717990b0ba8b8ea17a58cc87e57c5c9"}, ] [package.dependencies] -botocore = ">=1.31.52,<1.32.0" +botocore = ">=1.31.54,<1.32.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.6.0,<0.7.0" @@ -112,13 +112,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.31.52" +version = "1.31.54" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">= 3.7" files = [ - {file = "botocore-1.31.52-py3-none-any.whl", hash = "sha256:46b0a75a38521aa6a75fddccb1542e002930e609d4e13516f40fef170d32e515"}, - {file = "botocore-1.31.52.tar.gz", hash = "sha256:6d09881c5a8be34b497872ca3936f8757d886a6f42f2a8703411928189cfedc0"}, + {file = "botocore-1.31.54-py3-none-any.whl", hash = "sha256:71fdb337ddcdb6bf378e1211cba9ce754c35f12b1524c7d0c0c147b2310356c7"}, + {file = "botocore-1.31.54.tar.gz", hash = "sha256:c98e78a9490c4166b205f87912b46770e156bfe7d53bae54ccbd49c68a336ec6"}, ] [package.dependencies] @@ -288,19 +288,19 @@ test-randomorder = ["pytest-randomly"] [[package]] name = "dcicutils" -version = "7.12.0.1b5" +version = "7.12.0.2b6" description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources" optional = false python-versions = ">=3.8,<3.12" files = [ - {file = "dcicutils-7.12.0.1b5-py3-none-any.whl", hash = "sha256:0a35b364a9c2d5d443a220a9146071d967c44291d35fb84b9a47815b06a20a2e"}, - {file = "dcicutils-7.12.0.1b5.tar.gz", hash = "sha256:76484921d7def94a54a30b05a56faf28f3956815c6de7d093f9fc59e30743b30"}, + {file = "dcicutils-7.12.0.2b6-py3-none-any.whl", hash = "sha256:6e03e4d168f7056d4db4ebf7ec6c0367af62c9a2d36ba9808b20ed1ead875752"}, + {file = "dcicutils-7.12.0.2b6.tar.gz", hash = "sha256:1e499d539bef10d955ed1303530f74a5207aef7b454829ab5eedee7a76e2b7a2"}, ] [package.dependencies] aws-requests-auth = ">=0.4.2,<1" -boto3 = ">=1.28.51,<2.0.0" -botocore = ">=1.31.51,<2.0.0" +boto3 = ">=1.28.54,<2.0.0" +botocore = ">=1.31.54,<2.0.0" docker = ">=4.4.4,<5.0.0" elasticsearch = "7.13.4" gitpython = ">=3.1.2,<4.0.0" @@ -402,20 +402,20 @@ smmap = ">=3.0.1,<6" [[package]] name = "gitpython" -version = "3.1.36" +version = "3.1.37" description = "GitPython is a Python library used to interact with Git repositories" optional = false python-versions = ">=3.7" files = [ - {file = "GitPython-3.1.36-py3-none-any.whl", hash = "sha256:8d22b5cfefd17c79914226982bb7851d6ade47545b1735a9d010a2a4c26d8388"}, - {file = "GitPython-3.1.36.tar.gz", hash = "sha256:4bb0c2a6995e85064140d31a33289aa5dce80133a23d36fcd372d716c54d3ebf"}, + {file = "GitPython-3.1.37-py3-none-any.whl", hash = "sha256:5f4c4187de49616d710a77e98ddf17b4782060a1788df441846bddefbb89ab33"}, + {file = "GitPython-3.1.37.tar.gz", hash = "sha256:f9b9ddc0761c125d5780eab2d64be4873fc6817c2899cbcb34b02344bdc7bc54"}, ] [package.dependencies] gitdb = ">=4.0.1,<5" [package.extras] -test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar", "virtualenv"] +test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar"] [[package]] name = "idna" @@ -508,18 +508,18 @@ referencing = ">=0.28.0" [[package]] name = "magma-suite" -version = "1.5.0.3b1" +version = "1.5.0.3b2" description = "Collection of tools to manage meta-workflows automation." optional = false python-versions = ">=3.8,<3.12" files = [ - {file = "magma_suite-1.5.0.3b1-py3-none-any.whl", hash = "sha256:b79bd31f13afffaf2be1f6aaee57e061e35691318904a90f9912b09625a1c481"}, - {file = "magma_suite-1.5.0.3b1.tar.gz", hash = "sha256:be537aeff899495fcf7cf65630750f280211ad1d09e53ea6237886010d905dc9"}, + {file = "magma_suite-1.5.0.3b2-py3-none-any.whl", hash = "sha256:017d3381790124b8272fa96b5451098a23ddb2c99097280fec416cd6f39fca9a"}, + {file = "magma_suite-1.5.0.3b2.tar.gz", hash = "sha256:b45d0c91f8336a91c887d537c78142965766b619cae8c53fbf0c1e7cb3a69d6b"}, ] [package.dependencies] -dcicutils = "7.12.0.1b5" -tibanna-ff = "2.0.1.1b5" +dcicutils = "7.12.0.2b6" +tibanna-ff = "2.0.1.1b6" [[package]] name = "opensearch-py" @@ -1050,19 +1050,19 @@ tomlkit = ">=0.11.0,<0.12.0" [[package]] name = "tibanna-ff" -version = "2.0.1.1b5" +version = "2.0.1.1b6" description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud." optional = false python-versions = ">=3.8,<3.12" files = [ - {file = "tibanna_ff-2.0.1.1b5-py3-none-any.whl", hash = "sha256:5e3b68e77a9d9350fc10f8a54ac43f80d0007a823cac12d972fd9889eaad716b"}, - {file = "tibanna_ff-2.0.1.1b5.tar.gz", hash = "sha256:064a4f0d8b30e758e7983df6507fdeeb725b82264320a89cef10505e20540898"}, + {file = "tibanna_ff-2.0.1.1b6-py3-none-any.whl", hash = "sha256:c30e777b3076683d7b367284ae7c22f574b470e6da1b8b268d6c167b41be9780"}, + {file = "tibanna_ff-2.0.1.1b6.tar.gz", hash = "sha256:45f978dba2d215a3256d9256199bc97022d0dbbee74db2eadbb89ee9c95b7ca1"}, ] [package.dependencies] -boto3 = ">=1.28.51,<2.0.0" -botocore = ">=1.31.51,<2.0.0" -dcicutils = "7.12.0.1b5" +boto3 = ">=1.28.54,<2.0.0" +botocore = ">=1.31.54,<2.0.0" +dcicutils = "7.12.0.2b6" requests = "2.27.1" tibanna = "4.0.0.1b2" tomlkit = ">=0.11.0,<0.12.0" @@ -1232,4 +1232,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "3ffa08efbefd5e4907f28b0910e77445558f4106375597c10e6d428382af8074" +content-hash = "1b73005b4037057ca607de58ca1a3e24611db3ff83a082129aca3a9bb6ee9156" diff --git a/pyproject.toml b/pyproject.toml index f464da2..440e515 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "portal-pipeline-utils" -version = "2.1.0.1b1" # TODO: To become 3.0.0 +version = "2.1.0.1b2" # TODO: To become 3.0.0 description = "Utilities for deploying pipelines and interfacing with portal infrastructure." authors = [ "Michele Berselli ", @@ -22,11 +22,11 @@ packages = [ [tool.poetry.dependencies] python = ">=3.8,<3.12" -dcicutils = "7.12.0.1b5" -boto3 = "^1.28.51" -awscli = "^1.29.52" +dcicutils = "7.12.0.2b6" +boto3 = "^1.28.54" +awscli = "^1.29.54" jsonschema = "^4.7.2" -magma-suite = "1.5.0.3b1" +magma-suite = "1.5.0.3b2" [tool.poetry.dev-dependencies]