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install.sh
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install.sh
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#!/bin/bash
unamestr=`uname`
if [ "$unamestr" == 'Linux' ]; then
prof=~/.bashrc
mini_conda_url=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
matplotlibdir=~/.config/matplotlib
elif [ "$unamestr" == 'FreeBSD' ] || [ "$unamestr" == 'Darwin' ]; then
prof=~/.bash_profile
mini_conda_url=https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh
matplotlibdir=~/.matplotlib
else
echo "Unsupported environment. Exiting."
exit
fi
# Name of virtual environment
VENV=gmprocess
developer=0
py_ver=3.9
while getopts p:d FLAG; do
case $FLAG in
p)
py_ver=$OPTARG
;;
esac
done
echo "Using python version $py_ver"
# create a matplotlibrc file with the non-interactive backend "Agg" in it.
if [ ! -d "$matplotlibdir" ]; then
mkdir -p $matplotlibdir
if [ $? -ne 0 ];then
echo "Failed to create matplotlib configuration file. Exiting."
exit 1
fi
fi
matplotlibrc=$matplotlibdir/matplotlibrc
if [ ! -e "$matplotlibrc" ]; then
echo "backend : Agg" > "$matplotlibrc"
echo "NOTE: A non-interactive matplotlib backend (Agg) has been set for this user."
elif grep -Fxq "backend : Agg" $matplotlibrc ; then
:
elif [ ! grep -Fxq "backend" $matplotlibrc ]; then
echo "backend : Agg" >> $matplotlibrc
echo "NOTE: A non-interactive matplotlib backend (Agg) has been set for this user."
else
sed -i '' 's/backend.*/backend : Agg/' $matplotlibrc
echo "###############"
echo "NOTE: $matplotlibrc has been changed to set 'backend : Agg'"
echo "###############"
fi
# Is conda installed?
conda --version
if [ $? -ne 0 ]; then
echo "No conda detected, installing miniconda..."
command -v curl >/dev/null 2>&1 || { echo >&2 "Script requires curl but it's not installed. Aborting."; exit 1; }
curl -L $mini_conda_url -o miniconda.sh;
# if curl fails, bow out gracefully
if [ $? -ne 0 ];then
echo "Failed to download miniconda installer shell script. Exiting."
exit 1
fi
echo "Install directory: $HOME/miniconda"
bash miniconda.sh -f -b -p $HOME/miniconda
# if miniconda.sh fails, bow out gracefully
if [ $? -ne 0 ];then
echo "Failed to run miniconda installer shell script. Exiting."
exit 1
fi
# Need this to get conda into path
. $HOME/miniconda/etc/profile.d/conda.sh
# remove the shell script
rm miniconda.sh
else
echo "conda detected, installing $VENV environment..."
fi
echo "Installing mamba from conda-forge"
conda install mamba -y -n base -c conda-forge
echo "Installing packages from conda-forge"
# Choose an environment file based on platform
# only add this line if it does not already exist
grep "/etc/profile.d/conda.sh" $prof
if [ $? -ne 0 ]; then
echo ". $_CONDA_ROOT/etc/profile.d/conda.sh" >> $prof
fi
# Start in conda base environment
echo "Activate base virtual environment"
eval "$(conda shell.bash hook)"
conda activate base
# Remove existing environment if it exists
conda remove -y -n $VENV --all
# Create a conda virtual environment
conda config --add channels 'defaults'
conda config --add channels 'conda-forge'
conda config --set channel_priority strict
echo "Creating the $VENV virtual environment:"
# conda create -n $VENV -y --file requirements.txt
mamba create -n $VENV -y --file requirements.txt
# Bail out at this point if the conda create command fails.
# Clean up zip files we've downloaded
if [ $? -ne 0 ]; then
echo "Failed to create conda environment. Resolve any conflicts, then try again."
exit 1
fi
# Activate the new environment
echo "Activating the $VENV virtual environment"
conda activate $VENV
# if conda activate fails, bow out gracefully
if [ $? -ne 0 ];then
echo "Failed to activate ${VENV} conda environment. Exiting."
exit 1
fi
# if pip upgrade fails, complain but try to keep going
if [ $? -ne 0 ];then
echo "Failed to upgrade pip, trying to continue..."
exit 1
fi
# The presence of a __pycache__ folder in bin/ can cause the pip
# install to fail... just to be safe, we'll delete it here.
if [ -d bin/__pycache__ ]; then
rm -rf bin/__pycache__
fi
# Install openquake
pip install --upgrade --no-dependencies https://github.com/gem/oq-engine/archive/engine-3.12.zip
if [ $? -ne 0 ];then
echo "Failed to pip install OpenQuake. Exiting."
exit 1
fi
# This package
echo "Installing ${VENV}..."
# make sure the C code gets re-built in case numpy changed
find . -name '*.c' -exec touch {} \;
pip install -v -v -v -e .
# if pip install fails, bow out gracefully
if [ $? -ne 0 ];then
echo "Failed to pip install this package. Exiting."
exit 1
fi
# Tell the user they have to activate this environment
echo "Type 'conda activate $VENV' to use this new virtual environment."