Infos and warning

• change infos to warnings (#100)

narrow peaks and vertical bars

• small bug fix for summit usage (@lldelisle)
• I added a vertical bar in the narrowPeaks when plotted as box to be able to see the summits (@lldelisle)

pyGenomeTracks 3.1 release

• add the ability to control alpha of bedgraph tracks (thanks to @mikewolfe)
• add GTF support (thanks to @lldelisle)
• add support for various BED flavors (thanks to @lldelisle)
• adopt codebase to lastest matplotlib changes (thanks to @lldelisle)
• various new tests, code cleanups and smaller fixes all over

May 2019 release

• support for Python 2 has been removed.
• regions smaller than 200000 can be plotted with a warning message for plotting TADs.
• non existing chromosomes in some or all of the input files can be asked as regions to plot the tracks.

Epilogos, HiCMatrix support and coloring for negative bigwig values

• Support for epilogos #38
• HiC improvements and migration to use HiCMatrix. Thanks to @joachimwolff for these changes.
• Different coloring of negative and positive bigwig values is now possible. Thanks to @Phlya for this improvement.

modular tracks and Hi-C

This release makes it *very easy to add new tracks! See the Readme for examples on how to do that.

Furthermore, this release:

• Adds Hi-C tracks
• Allows a track be plotted over the previous. There is not limit on the tracks that can be plotted on top of each other
• Removed unnecessary empty space around the resulting image
• Enlarged the README.md file with new examples and a mini-tutorial on how to add new tracks.
• Added chromosome name and title to x-axis plot
• Added option to plot links as 'triangles'. This is useful to overlay links with Hi-C data to identify the contact pixel.
• Added line width to bed track
• Added 'bed graph' track
• Added a track that can plot .narrowPeaks

python3 & python2 version

This version added python3 compatibility to the code

Initial release

0.1

Update README.md