Added code from private repo

.gitignore

@@ -1,3 +1,11 @@
+*.iml
+.iml
+.simu
+.idea
+.idea/*
+output
+analys/output
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

README.md

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 # state-sampling
 Python code for finding single equlibirated states and analysis of GPCR data
+
+Written by Oliver Fleetwood 2019-2020.

__init__.py

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+__all__ = ['statesampling']

environment.yml

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+name: py37
+channels:
+  - omnia
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - blas=1.0=mkl
+  - blosc=1.16.3=hd408876_0
+  - bzip2=1.0.8=h7b6447c_0
+  - ca-certificates=2019.6.16=hecc5488_0
+  - certifi=2019.6.16=py36_1
+  - dataclasses=0.6=py_0
+  - hdf5=1.10.4=hb1b8bf9_0
+  - intel-openmp=2019.4=243
+  - joblib=0.13.2=py36_0
+  - libedit=3.1.20181209=hc058e9b_0
+  - libffi=3.2.1=hd88cf55_4
+  - libgcc-ng=9.1.0=hdf63c60_0
+  - libgfortran-ng=7.3.0=hdf63c60_0
+  - libstdcxx-ng=9.1.0=hdf63c60_0
+  - lz4-c=1.8.1.2=h14c3975_0
+  - lzo=2.10=h49e0be7_2
+  - mdtraj=1.9.1=py36_0
+  - mkl=2019.4=243
+  - mkl-service=2.0.2=py36h7b6447c_0
+  - mkl_fft=1.0.14=py36ha843d7b_0
+  - mkl_random=1.0.2=py36hd81dba3_0
+  - mock=3.0.5=py36_0
+  - ncurses=6.1=he6710b0_1
+  - numexpr=2.7.0=py36h9e4a6bb_0
+  - numpy=1.16.4=py36h7e9f1db_0
+  - numpy-base=1.16.4=py36hde5b4d6_0
+  - openssl=1.1.1c=h516909a_0
+  - pandas=0.25.1=py36he6710b0_0
+  - pip=19.2.2=py36_0
+  - pytables=3.5.2=py36h71ec239_1
+  - python=3.6.9=h265db76_0
+  - python-dateutil=2.8.0=py36_0
+  - pytz=2019.2=py_0
+  - readline=7.0=h7b6447c_5
+  - scikit-learn=0.21.2=py36hd81dba3_0
+  - scipy=1.3.1=py36h7c811a0_0
+  - setuptools=41.0.1=py36_0
+  - six=1.12.0=py36_0
+  - snappy=1.1.7=hbae5bb6_3
+  - sqlite=3.29.0=h7b6447c_0
+  - tk=8.6.8=hbc83047_0
+  - wheel=0.33.4=py36_0
+  - xz=5.2.4=h14c3975_4
+  - zlib=1.2.11=h7b6447c_3
+  - zstd=1.3.7=h0b5b093_0
+prefix: /home/oliverfl/anaconda3/envs/py37
+

examples/beta2/README.md

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+# About
+Code to reproduce results in an upcoming paper. 
+Reference to come upon publication