forked from eborin/gromacs-mo833a
-
Notifications
You must be signed in to change notification settings - Fork 0
/
.gitlab-ci.yml
1527 lines (1416 loc) · 33.6 KB
/
.gitlab-ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
include:
- local: '/admin/ci-templates/.include-template.yml'
.configure-extends-template:
extends:
- .configure-build-template
- .no-cache-template
- .variables-template
- .tags-template
.configure-release-extends-template:
extends:
- .configure-build-release-template
- .no-cache-template
- .variables-template
- .tags-template
.build-extends-template:
extends:
- .binary-build-template
- .build-cache-template
- .variables-template
- .tags-template
.test-extends-template:
extends:
- .test-base-template
- .pull-cache-template
- .test-script-template
- .variables-template
- .tags-template
.regressiontests-prepare-extends-template:
extends:
- .no-cache-template
- .variables-template
- .tags-template
# CI is organized into stages so that if early stages fail
# the later ones are not run.
stages:
# Initial test build for checking simple compilation and getting regressiontest repo
- pre-build
# Configuration for building and testing
- configure-build
# Build GROMACS in multiple configurations
- build
# Unit test each configuration, perhaps in multiple ways
- test
# Generate documentation files
- documentation
# Check documentation from source code for errors
- source-check
# Linting, docs, static analysis, coverage, code analysis...
- post-test
# Nightly work to configure builds
- nightly-configure
# Nightly build stage
- nightly-build
# Nightly deploy stage
- nightly-deploy
# Release work for packaging code
- release-package
# Release checksum verification
- release-verify
# Configure code for release builds
- release-configure
# Release work for packaging code
- release-build
# Tests for release code
- release-tests
# Prepare for deploying artifacts
- release-prepare-deploy
# Deploy stage for release builds
- release-deploy
# Templates for configuration stage
.configure-gcc:
extends:
- .configure-extends-template
- .gcc-before-script-template
- .build-gcc-template
.configure-gcc-release:
extends:
- .configure-release-extends-template
- .gcc-before-script-template
- .build-gcc-template
.configure-gcc-cuda:
extends:
- .configure-gcc
- .cuda-template
.configure-clang:
extends:
- .configure-extends-template
- .clang-before-script-template
- .build-clang-template
.configure-clang-release:
extends:
- .configure-release-extends-template
- .clang-before-script-template
- .build-clang-template
.configure-docs:
extends:
- .configure-extends-template
- .configure-docs-template
- .documentation-before-script-template
.configure-docs-release:
extends:
- .configure-extends-template
- .configure-docs-release-template
- .documentation-before-script-template
# Templates for build stage
.build-archive:
extends:
- .build-extends-template
- .documentation-before-script-template
- .build-docs-binary-template
- .archive-build-template
.build-gcc:
extends:
- .build-extends-template
- .gcc-before-script-template
- .build-gcc-template
.build-clang:
extends:
- .build-extends-template
- .clang-before-script-template
- .build-clang-template
.build-docs-binary:
extends:
- .build-extends-template
- .build-cache-template
- .build-docs-binary-template
- .documentation-before-script-template
.build-docs-webpage:
extends:
- .binary-build-template
- .variables-template
- .tags-template
- .no-cache-template
- .build-docs-webpage-template
- .documentation-before-script-template
.build-gcc-cuda:
extends:
- .build-gcc
- .cuda-template
# Templates for test stage
.test-gcc:
extends:
- .test-extends-template
- .gcc-before-script-template
- .test-gcc-template
.test-gcc-cuda:
extends:
- .test-gcc
- .cuda-template
.test-clang:
extends:
- .test-extends-template
- .clang-before-script-template
- .test-clang-template
# Special job to package regressiontest files and have them available for testing
# Runs during pre-build
prepare-regressiontests:
extends:
- .regressiontests-prepare-extends-template
- .regressiontests-template
prepare-release-version:
extends:
- .regressiontests-prepare-extends-template
- .release-version-template
# Initial build that always needs to pass before follow-up stages run
simple-build:
extends:
- .simple-build-template
- .build-cache-template
- .variables-template
- .tags-template
- .gcc-before-script-template
- .build-gcc-template
- .gcc7-template
variables:
COMPILER_MAJOR_VERSION: 7
BUILD_DIR: simple-build
except:
variables:
- $GROMACS_RELEASE
# Jobs running in first pre-build stage
configure-gcc-7:
extends:
- .configure-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
except:
variables:
- $GROMACS_RELEASE
configure-gcc-7-gmxapi:
extends:
- .configure-gcc
- .configure-gmxapi-template
- .gcc7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
except:
variables:
- $GROMACS_RELEASE
configure-gcc-7-double:
extends:
- .configure-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
except:
variables:
- $GROMACS_RELEASE
configure-gcc-8:
extends:
- .configure-gcc
- .gcc8-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 8
except:
variables:
- $GROMACS_RELEASE
configure-gcc-8-cuda-10.2:
extends:
- .configure-gcc-cuda
- .gcc-8-cuda-10.2-template
needs:
- job: simple-build
artifacts: false
except:
variables:
- $GROMACS_RELEASE
configure-gcc-7-simd-sse41:
extends:
- .configure-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=SSE4.1"
except:
variables:
- $GROMACS_RELEASE
configure-clang-7:
extends:
- .configure-clang
- .clang7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
except:
variables:
- $GROMACS_RELEASE
configure-clang-7-gmxapi:
extends:
- .configure-clang
- .configure-gmxapi-template
- .clang7-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 7
except:
variables:
- $GROMACS_RELEASE
configure-clang-8:
extends:
- .configure-clang
- .clang8-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: 8
except:
variables:
- $GROMACS_RELEASE
# For version of clang before 7, we need to always provide the full version
# Use something like this instead in the download script:
# APT_COMPILER_VERSION=$(($COMPILER_MAJOR_VERSION < 7 ? "${COMPILER_MAJOR_VERSION}.0" : $COMPILER_MAJOR_VERSION))
configure-clang-6:
extends:
- .configure-clang
- .clang6-template
needs:
- job: simple-build
artifacts: false
variables:
COMPILER_MAJOR_VERSION: "6.0"
CMAKE_MPI_OPTIONS: -DGMX_OPENMP=OFF
except:
variables:
- $GROMACS_RELEASE
configure-clang-tidy:
extends:
- .configure-clang
- .clang7-template
needs:
- job: simple-build
artifacts: false
variables:
BUILD_DIR: build-clang-tidy
COMPILER_MAJOR_VERSION: 7
CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
except:
variables:
- $GROMACS_RELEASE
configure-docs:
extends:
- .configure-docs
needs:
- job: simple-build
artifacts: false
variables:
BUILD_DIR: build-docs
CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
except:
variables:
- $GROMACS_RELEASE
configure-docs-gmxapi:
extends:
- .configure-docs
- .configure-gmxapi-template
needs:
- job: simple-build
artifacts: false
variables:
BUILD_DIR: build-docs-gmxapi
CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
except:
variables:
- $GROMACS_RELEASE
# Only running in scheduled pipelines that are not release builds
configure-archive-nightly:
stage: nightly-configure
only:
- web
- triggers
- schedules
needs:
- job: simple-build
artifacts: false
except:
variables:
- $GROMACS_RELEASE
extends:
- .configure-docs
variables:
BUILD_DIR: build-package
CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
configure-archive-release:
only:
refs:
- web
- triggers
- schedules
variables:
- $GROMACS_RELEASE
extends:
- .configure-docs
variables:
BUILD_DIR: build-package
CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
# Jobs running during build stage
build-gcc-7:
extends:
- .build-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-7
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-gcc-7-gmxapi:
extends:
- .build-gcc
- .gmxapi-extra-installs
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-7-gmxapi
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-gcc-7-double:
extends:
- .build-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-7-double
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-gcc-8:
extends:
- .build-gcc
- .gcc8-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-8
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-gcc-8-cuda-10.2:
extends:
- .build-gcc-cuda
- .gcc-8-cuda-10.2-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-8-cuda-10.2
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-gcc-7-simd-sse41:
extends:
- .build-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: configure-gcc-7-simd-sse41
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-clang-7:
extends:
- .build-clang
- .clang7-template
needs:
- job: simple-build
artifacts: false
- job: configure-clang-7
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-clang-7-gmxapi:
extends:
- .build-clang
- .gmxapi-extra-installs
- .clang7-template
needs:
- job: simple-build
artifacts: false
- job: configure-clang-7-gmxapi
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-clang-8:
extends:
- .build-clang
- .clang8-template
needs:
- job: simple-build
artifacts: false
- job: configure-clang-8
artifacts: true
except:
variables:
- $GROMACS_RELEASE
build-clang-6:
extends:
- .build-clang
- .clang6-template
needs:
- job: simple-build
artifacts: false
- job: configure-clang-6
artifacts: true
except:
variables:
- $GROMACS_RELEASE
# Jobs running during test stage
test-gcc-7:
extends:
- .test-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: build-gcc-7
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-gcc-7-gmxapi:
extends:
- .test-gcc
- .gmxapi-extra-installs
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: build-gcc-7-gmxapi
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-gcc-7-double:
extends:
- .test-gcc
- .gcc7-template
variables:
REGRESSIONTEST_DOUBLE: "-double"
needs:
- job: simple-build
artifacts: false
- job: build-gcc-7-double
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-gcc-8:
extends:
- .test-gcc
- .gcc8-template
needs:
- job: simple-build
artifacts: false
- job: build-gcc-8
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-gcc-8-cuda-10.2:
variables:
KUBERNETES_EXTENDED_RESOURCE_NAME: "nvidia.com/gpu"
KUBERNETES_EXTENDED_RESOURCE_LIMIT: 1
extends:
- .test-gcc-cuda
- .gcc-8-cuda-10.2-template
variables:
REGRESSIONTEST_PME_RANK_NUMBER: 0
REGRESSIONTEST_TOTAL_RANK_NUMBER: 2
REGRESSIONTEST_OMP_RANK_NUMBER: 1
needs:
- job: simple-build
artifacts: false
- job: build-gcc-8-cuda-10.2
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-gcc-7-simd-sse41:
extends:
- .test-gcc
- .gcc7-template
needs:
- job: simple-build
artifacts: false
- job: build-gcc-7-simd-sse41
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-clang-7:
extends:
- .test-clang
- .clang7-template
needs:
- job: simple-build
artifacts: false
- job: build-clang-7
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-clang-7-gmxapi:
extends:
- .test-clang
- .gmxapi-extra-installs
- .clang7-template
needs:
- job: simple-build
artifacts: false
- job: build-clang-7-gmxapi
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-clang-8:
extends:
- .test-clang
- .clang8-template
needs:
- job: simple-build
artifacts: false
- job: build-clang-8
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
test-clang-6:
extends:
- .test-clang
- .clang6-template
variables:
REGRESSIONTEST_OMP_RANK_NUMBER: 0
needs:
- job: simple-build
artifacts: false
- job: build-clang-6
- job: prepare-regressiontests
except:
variables:
- $GROMACS_RELEASE
# Jobs running in source checking stage
build-clang-tidy:
extends:
- .build-clang
- .clang7-template
stage: source-check
needs:
- job: simple-build
artifacts: false
- job: configure-clang-tidy
artifacts: true
variables:
BUILD_DIR: build-clang-tidy
COMPILER_MAJOR_VERSION: 7
EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
except:
variables:
- $GROMACS_RELEASE
run-clang-format:
extends:
- .binary-build-template
- .no-cache-template
- .variables-template
- .tags-template
- .clang-before-script-template
- .build-clang-template
- .clang7-template
stage: source-check
when: always
needs:
- job: simple-build
artifacts: false
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
KUBERNETES_MEMORY_LIMIT: 2Gi
COMPILER_MAJOR_VERSION: 7
EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
except:
variables:
- $GROMACS_RELEASE
script:
- export CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION
- admin/clang-format.sh check --rev=HEAD^ --warnings=clang-format.log
- grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
- if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
artifacts:
when: on_failure
paths:
- clang-format.log
- formatting.txt
run-copyright-check:
extends:
- .binary-build-template
- .no-cache-template
- .variables-template
- .tags-template
- .clang-before-script-template
- .build-clang-template
- .clang7-template
stage: source-check
when: always
needs:
- job: simple-build
artifacts: false
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
KUBERNETES_MEMORY_LIMIT: 2Gi
except:
variables:
- $GROMACS_RELEASE
script:
- admin/copyright.sh check --rev=HEAD^ --warnings=copyright.log
- grep -iq "copyright year" copyright.log | tee years.log || true
- grep -iq "copyright header" copyright.log | tee headers.log || true
- if [[ -s years.log || -s headers.log ]] ; then
echo "Copyright information needs updating" ;
exit 1 ;
fi
artifacts:
when: on_failure
paths:
- copyright.log
- years.log
- headers.log
run-check-source:
extends:
- .no-cache-template
- .variables-template
- .tags-template
- .build-docs-binary-template
- .documentation-before-script-template
stage: source-check
needs:
- job: simple-build
artifacts: false
- job: build-docs
artifacts: true
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
KUBERNETES_MEMORY_LIMIT: 2Gi
BUILD_DIR: build-docs
COMPILER_MAJOR_VERSION: 7
except:
variables:
- $GROMACS_RELEASE
script:
- cd $BUILD_DIR
- cmake --build . --target check-source
- grep -qi "error" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee doxygenError.txt || true
- grep -qi "warning" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
- if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
artifacts:
name: docs-artifacts-$CI_COMMIT_REF_SLUG
when: always
expire_in: 1 week
paths:
- $BUILD_DIR/docs/doxygen/doxygen-xml.log
- $BUILD_DIR/docs/doxygen/check-source.log
# Jobs running during documentation build stage
build-docs:
extends:
- .build-docs-binary
stage: documentation
needs:
- job: simple-build
artifacts: false
- job: configure-docs
artifacts: true
variables:
BUILD_DIR: build-docs
except:
variables:
- $GROMACS_RELEASE
build-docs-gmxapi:
extends:
- .build-docs-binary
- .gmxapi-extra-installs
stage: documentation
needs:
- job: simple-build
artifacts: false
- job: configure-docs-gmxapi
artifacts: true
variables:
BUILD_DIR: build-docs-gmxapi
except:
variables:
- $GROMACS_RELEASE
# Jobs running in post-test stage
# The manual build is built separately so that errors in converting
# Sphinx to LaTeX and compiling can always be found in the
# all-output.txt file, while avoiding many thousands of lines of spam
# from pdflatex for normal builds. This does reduce the available
# parallel utilization, and so increases the build time.
#
# TODO why are the doxygen and sphinx log files disappearing
# TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
webpage:
extends:
- .build-docs-webpage
stage: post-test
needs:
- job: build-docs
artifacts: true
- job: run-check-source
artifacts: false
variables:
BUILD_DIR: build-docs
except:
variables:
- $GROMACS_RELEASE
webpage-gmxapi:
extends:
- .build-docs-webpage
- .gmxapi-extra-installs
stage: post-test
needs:
- job: build-docs-gmxapi
artifacts: true
- job: run-check-source
artifacts: false
variables:
BUILD_DIR: build-docs-gmxapi
except:
variables:
- $GROMACS_RELEASE
# Jobs running in release stage
linkchecker:
extends:
- .build-docs-webpage
stage: nightly-build
dependencies:
- webpage-gmxapi
only:
- web
- schedules
- triggers
- merge_requests
except:
variables:
- $GROMACS_RELEASE
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
KUBERNETES_MEMORY_LIMIT: 2Gi
BUILD_DIR: build-docs-gmxapi
script:
- cd $BUILD_DIR
- linkchecker docs/html/index.html -f ../docs/linkcheckerrc -Fxml --ignore-url html-full
--ignore-url html-user --ignore-url html-lib --ignore-url .tar.gz --ignore-url _sources
-o xml
artifacts:
reports:
junit: $BUILD_DIR/linkchecker-out.xml
build-archive-nightly:
extends:
- .build-archive
stage: nightly-build
needs:
- job: simple-build
artifacts: false
- job: configure-archive-nightly
artifacts: true
only:
- web
- triggers
- schedules
except:
variables:
- $GROMACS_RELEASE
variables:
BUILD_DIR: build-package
webpage-nightly:
extends:
- .build-docs-webpage
- .configure-gmxapi-template
stage: nightly-deploy
only:
- web
- triggers
- schedules
except:
variables:
- $GROMACS_RELEASE
needs:
- job: simple-build
artifacts: false
- job: linkchecker
artifacts: false
- job: webpage-gmxapi
artifacts: true
variables:
BUILD_DIR: build-docs-gmxapi
script:
- tar czf webpage.tar.gz $BUILD_DIR/docs/html/
artifacts:
when: always
paths:
- webpage.tar.gz
package-regressiontests-release:
extends:
- .regressiontests-prepare-extends-template
- .regressiontests-release-template
needs:
- job: prepare-release-version
artifacts: true
only:
refs:
- triggers
- web
- schedules
variables:
- $GROMACS_RELEASE
package-archive-release:
extends:
- .build-archive
stage: release-package