Skip to content

Commit

Permalink
Minor updates
Browse files Browse the repository at this point in the history
  • Loading branch information
pjbouchet committed Aug 27, 2020
1 parent f609c5f commit 97f03f8
Show file tree
Hide file tree
Showing 7 changed files with 108 additions and 979 deletions.
16 changes: 2 additions & 14 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ The idea behind `dsmextra` is to aid ecologists, practitioners, and model end-us

### Getting started

If you are just getting started with `dsmextra`, we recommend reading the tutorial [vignette](https://densitymodelling.github.io/dsmextra/articles/dsmextra.html), which provides a quick introduction to the package. You may also find the below technical report useful:
If you are just getting started with `dsmextra`, we recommend reading the tutorial [vignette](https://densitymodelling.github.io/dsmextra/articles/dsmextra.html), which provides a quick introduction to the package. You may also find the below paper and technical report useful:

* Bouchet et al. (2020). dsmextra: Extrapolation assessment tools for density surface models. Methods in Ecology and Evolution. DOI: [10.1111/2041-210X.13469](https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.13469)

Expand All @@ -37,7 +37,7 @@ If you are just getting started with `dsmextra`, we recommend reading the tutori

### Acknowledgements

This R package was developed for the [DenMod project](https://synergy.st-andrews.ac.uk/denmod/) (Working group for the advancement of marine species density surface modelling), and was funded by OPNAV N45 and the SURTASS LFA Settlement Agreement, being managed by the U.S. Navy’s Living Marine Resources program under Contract No. N39430-17-C-1982. The sperm whale data showcased in the [online vignette](https://densitymodelling.github.io/dsmextra/articles/dsmextra-vignette.html) were provided by Debi Palka (NOAA North East Fisheries Science Center) and Lance Garrison (NOAA South East Fisheries Science Center). Initial data processing was undertaken by Jason Roberts (Marine Geospatial Ecology Lab, Duke University).
This R package was developed for the [DenMod project](https://synergy.st-andrews.ac.uk/denmod/) (Working group for the advancement of marine species density surface modelling), and was funded by OPNAV N45 and the SURTASS LFA Settlement Agreement, being managed by the U.S. Navy’s Living Marine Resources program under Contract No. N39430-17-C-1982. The sperm whale data showcased in the [online vignette](https://densitymodelling.github.io/dsmextra/articles/dsmextra.html) were provided by Debi Palka (NOAA North East Fisheries Science Center) and Lance Garrison (NOAA South East Fisheries Science Center). Initial data processing was undertaken by Jason Roberts (Marine Geospatial Ecology Lab, Duke University).

### Installation

Expand All @@ -48,18 +48,6 @@ if (!require("remotes")) install.packages("remotes")
remotes::install_github("densitymodelling/dsmextra")
```

### Important note

**May 2020**

The [WhatIf](https://gking.harvard.edu/whatif) package, on which `dsmextra` depends, was removed from CRAN on 2020-03-07. Similarly, the [Zelig](https://zeligproject.org/) package (a dependency of WhatIf) was temporarily archived on 2020-03-24. As this may cause issues when first setting up `dsmextra`, a patch correction has been released under version 1.1.0 to ensure that `WhatIf` and `Zelig` are automatically pulled from Github during installation. Alternatively, both packages can be manually installed either from Github or from their respective archives (see [here](https://cran.r-project.org/web/packages/WhatIf/index.html) and [here](https://cran.r-project.org/web/packages/Zelig/index.html)).

```r
if (!require("remotes")) install.packages("remotes")
remotes::install_github("IQSS/Zelig")
remotes::install_github("IQSS/WhatIf")
```

### Found a bug? Have a feature request?

Please submit an issue or send a pull request to the [Github repository](https://github.com/densitymodelling/dsmextra/).
28 changes: 14 additions & 14 deletions docs/articles/dsmextra-bigdata.html

Large diffs are not rendered by default.

Loading

0 comments on commit 97f03f8

Please sign in to comment.