update change log #40
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| tags: | |
| - '*' | |
| pull_request: | |
| jobs: | |
| tests: | |
| name: Unit tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.9', '3.10'] #, '3.11'] There are still issues with Numpy <1.23 and 3.11. | |
| numpy-version: ['<1.23'] | |
| astropy-version: ['<6.0', '<7.0'] | |
| desimeter-version: ['0.7.0'] | |
| desiutil-version: ['3.4.2'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil" | |
| python -m pip install "git+https://github.com/desihub/desimeter.git@${{ matrix.desimeter-version }}#egg=desimeter" | |
| python -m pip install --upgrade "numpy${{ matrix.numpy-version }}" | |
| python -m pip install --upgrade "astropy${{ matrix.astropy-version }}" | |
| python -m pip install --editable .[test] | |
| - name: Run the test | |
| run: pytest | |
| coverage: | |
| name: Test coverage | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| numpy-version: ['<1.23'] | |
| astropy-version: ['<6.0'] | |
| desimeter-version: ['0.7.0'] | |
| desiutil-version: ['3.4.2'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil" | |
| python -m pip install "git+https://github.com/desihub/desimeter.git@${{ matrix.desimeter-version }}#egg=desimeter" | |
| python -m pip install --upgrade "numpy${{ matrix.numpy-version }}" | |
| python -m pip install --upgrade "astropy${{ matrix.astropy-version }}" | |
| python -m pip install --editable .[coverage] | |
| - name: Run the test with coverage | |
| run: pytest --cov | |
| - name: Coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
| run: coveralls | |
| docs: | |
| name: Doc test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip setuptools wheel Sphinx sphinx-rtd-theme | |
| - name: Test the documentation | |
| run: sphinx-build -W --keep-going -b html doc doc/_build/html | |
| api: | |
| name: API doc completeness test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| desiutil-version: ['3.4.2'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil" | |
| - name: Generate api.rst | |
| run: | | |
| desi_api_file --api ./api.rst gfa_reduce | |
| cat ./api.rst | perl -ne 'BEGIN {$m=0} if (/\.attic/) {$m=1} elsif ($m==1) {$m=2} elsif ($m==2) {$m=3} else {$m=0;print}' > ./api_no_attic.rst | |
| - name: Compare generated api.rst to checked-in version | |
| run: diff --ignore-space-change --ignore-blank-lines ./api_no_attic.rst ./doc/api.rst | |
| style: | |
| name: Style check | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip setuptools wheel pycodestyle | |
| - name: Test the style; failures are allowed | |
| # This is equivalent to an allowed falure. | |
| continue-on-error: true | |
| run: pycodestyle --count py/gfa_reduce |