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python-package.yml
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# Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml
name: CI
on:
push:
branches:
- '*'
tags:
- '*'
pull_request:
jobs:
tests:
name: Unit tests
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: [ubuntu-latest]
python-version: ['3.9', '3.10'] #, '3.11'] There are still issues with Numpy <1.23 and 3.11.
numpy-version: ['<1.23']
astropy-version: ['<6.0', '<7.0']
desimeter-version: ['0.7.0']
desiutil-version: ['3.4.2']
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil"
python -m pip install "git+https://github.com/desihub/desimeter.git@${{ matrix.desimeter-version }}#egg=desimeter"
python -m pip install --upgrade "numpy${{ matrix.numpy-version }}"
python -m pip install --upgrade "astropy${{ matrix.astropy-version }}"
python -m pip install --editable .[test]
- name: Run the test
run: pytest
coverage:
name: Test coverage
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
numpy-version: ['<1.23']
astropy-version: ['<6.0']
desimeter-version: ['0.7.0']
desiutil-version: ['3.4.2']
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil"
python -m pip install "git+https://github.com/desihub/desimeter.git@${{ matrix.desimeter-version }}#egg=desimeter"
python -m pip install --upgrade "numpy${{ matrix.numpy-version }}"
python -m pip install --upgrade "astropy${{ matrix.astropy-version }}"
python -m pip install --editable .[coverage]
- name: Run the test with coverage
run: pytest --cov
- name: Coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
run: coveralls
docs:
name: Doc test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip setuptools wheel Sphinx sphinx-rtd-theme
- name: Test the documentation
run: sphinx-build -W --keep-going -b html doc doc/_build/html
api:
name: API doc completeness test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
desiutil-version: ['3.4.2']
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil"
- name: Generate api.rst
run: |
desi_api_file --api ./api.rst gfa_reduce
cat ./api.rst | perl -ne 'BEGIN {$m=0} if (/\.attic/) {$m=1} elsif ($m==1) {$m=2} elsif ($m==2) {$m=3} else {$m=0;print}' > ./api_no_attic.rst
- name: Compare generated api.rst to checked-in version
run: diff --ignore-space-change --ignore-blank-lines ./api_no_attic.rst ./doc/api.rst
style:
name: Style check
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip setuptools wheel pycodestyle
- name: Test the style; failures are allowed
# This is equivalent to an allowed falure.
continue-on-error: true
run: pycodestyle --count py/gfa_reduce