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Training material of every de.STAIR de.NBI training event, on-site support training, shared on-line videos and scripts

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Training material

This repository collects the training materials used during our de.NBI training events, on-site support trainings, and on-line tutorials.

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de.NBI training events

The following table collects the list of de.NBI training events that we organized to introduce data analysis concepts to undergraduates, PhD students, postdocs, and Life Science scholars.

Date Location
2016-10-26 de.NBI training at EASyM 2016 Berlin
2017-03-29 de.NBI training at CASyM 2017 Ljubljana
2017-09-18 de.NBI training at GMDS 2017 Oldenburg
2017-10-04 de.NBI training at Albert-Ludwigs-Universität Freiburg
2018-03-07 de.NBI training at Christian-Albrechts-Universität Kiel
2018-06-27 de.NBI training at Leibniz-Institut für Alternsforschung (FLI) Jena
2018-09-04 de.NBI training at GMDS 2018 Osnabrück
2019-03-06 de.NBI training at Universität Rostock
2019-09-08 de.NBI training at GMDS 2019 Dortmund
2019-10-09 de.NBI training at Albert-Ludwigs-Universität Freiburg

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On-site support trainings

The following table collects the list of on-site support training events that we organized to introduce data analysis concepts to undergraduates, PhD students, postdocs, and Life Science scholars.

Date Location
2017-03-20 On-site support training at Universität Rostock
2017-09-29 On-site support training at Leibniz-Institut für Nutztierbiologie (FBN) Dummerstorf
2017-10-10 On-site support training at Universität Rostock
2018-05-21 On-site support training at Universität Rostock
2019-01-07 On-site support training at Leibniz-Institut für Nutztierbiologie (FBN) Dummerstorf
2019-01-08 On-site support training at Universität Rostock
2019-01-29 On-site support training at Universität Rostock
2019-04-04 On-site support training at Leibniz-Institut für Alternsforschung (FLI) Jena
2020-04-08 Online support training at University Medical Centre Rostock

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Video tutorials

In the following sections we provide some video tutorials, which we created to illustrate tools and data analysis concept to the participants of our training sessions.

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Gene enrichment analysis with Enrichr

In this tutorial we show the use of Enrichr (Chen et al. 2013, Kuleshov et al. 2016) to carry out the enrichment analysis of a list of differtially expressed genes, which we obtained from the RNA-Seq analysis of two NGS Human breast cancer data sets.

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Running a Galaxy Docker container using Kitematic

In this tutorial we show how to set up your system in order to run the Galaxy RNA workbench (Grüning et al. 2017, Fallmann et al. 2019) as a Docker container, using the Kitematic desktop application.

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Training material of every de.STAIR de.NBI training event, on-site support training, shared on-line videos and scripts

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