Fibromine

A Shiny-powered application for fibrosis-related data integration and mining aiming to the acceleration of pulmonary fibrosis research.

Features

• On the fly integration of differential expression analysis data from a great set of transcriptomic and proteomic datasets
• Exploration of differential gene/protein expression motifs across all supported datasets
• Real-time creation of fibrosis-specific protein-protein interaction networks
• Rich 3rd party annotation and datasets metadata
• Pathway analysis tool of consensus deregulated genes using the KEGG and GO databases as well as a collection of COVID-19 specific gene sets

R packages and JS libraries used

shiny 
shinyjs
shinyBS 
shinydashboard
shinycssloaders 
DT 
heatmaply 
RSQLite
reshape 
igraph 
visNetwork
htmlwidgets 
openxlsx 
rjson
rintrojs
httr
enrichR
datatables-rowsgroup (Alexey Shildyakov)