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satool

satool is a tool for managing SAT format.

Dependencies

  1. zlib

Third parties

  1. graphviz

Installation

Please use the following code to install satool:

git clone https://github.com/dfguan/satool.git
cd satool/src && make

Usage

Convert SAT to AGP

Given a sat file, convert it into AGP format

bin/satool agp $sat > t.agp

Visualize a scaffold

Given a scaffold name scf and sat, visualize it

bin/satool vis -s $scf $sat > t.dot
dot -Tpng -o t.png t.dot 

sample