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Update README.md
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corinwagen authored Aug 18, 2023
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Expand Up @@ -44,6 +44,27 @@ How the Hessian is updated.
- 2: Bofill update (default)
- 3: BGFS update

#### ``tolerance``
Convergence criterion on max gradient component. Default is 4.5E-4.

#### ``tolerance_e``
Convergence criterion on max energy change. Default is 1E-6.

#### ``maxcycle``
Max number of cycles. Default is 100.

#### ``lbgfs_mem``
Memory for L-BGFS algorithm. Defaults to ``nvarin``, with min value 5 and max value 50.

#### ``maxupd``
Max number of Hessian updates. Default is 50.

#### ``maxstep``
Maximum stepsize (in internal coordinates). Default is 0.5.

#### ``delta``
Delta for finite-difference Hessian calculations (in internal coordinates). Default is 0.01.

#### ``spec``
Freezing atoms, etc for optimization. (``spec`` is an array with an entry for each atom.)
- \>0: active, treated normally. The value can be used to encode residue/fragment number.
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