Update image requirements

digitalearthafrica · Sep 2, 2022 · f1976cf · f1976cf
1 parent 7721dae
commit f1976cf
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Showing 3 changed files with 108 additions and 11 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -10,6 +10,11 @@ RUN apt-get update \
     python3-pip \
     # For Psycopg2
     libpq-dev python3-dev \
+    # For mpi4py
+    libopenmpi-dev \
+    # For cartopy
+    libproj-dev \
+    libgeos-dev \
     # For SSL
     ca-certificates \
     # Tidy up

diff --git a/requirements.in b/requirements.in
@@ -15,6 +15,7 @@ pyTMD>=1.0.6
 pandas>=1.3.4
 pygeos>=0.10.2
 pyproj>=3.2.1
+python-geohash
 pytz>=2021.1
 PyYAML>=6.0
 rasterio>=1.2.9

diff --git a/requirements.txt b/requirements.txt
@@ -17,18 +17,18 @@ aiohttp==3.8.1
     # via -r requirements.in
 aiosignal==1.2.0
     # via aiohttp
-appnope==0.1.2
-    # via
-    #   ipykernel
-    #   ipython
 argon2-cffi==21.3.0
     # via notebook
 argon2-cffi-bindings==21.2.0
     # via argon2-cffi
+asciitree==0.3.3
+    # via zarr
 asttokens==2.0.5
     # via stack-data
 async-timeout==4.0.2
     # via aiohttp
+atm1b-qfit==1.0.1
+    # via pytmd
 attrs==21.4.0
     # via
     #   aiohttp
@@ -37,10 +37,14 @@ attrs==21.4.0
     #   rasterio
 backcall==0.2.0
     # via ipython
+bcrypt==4.0.0
+    # via paramiko
 bleach==4.1.0
     # via nbconvert
 boto3==1.21.16
-    # via datacube
+    # via
+    #   datacube
+    #   icesat2-toolkit
 botocore==1.24.16
     # via
     #   -r requirements.in
@@ -55,14 +59,19 @@ branca==0.4.2
     #   folium
 cachetools==5.0.0
     # via datacube
+cartopy==0.20.3
+    # via icesat2-toolkit
 certifi==2021.10.8
     # via
     #   fiona
     #   pyproj
     #   rasterio
     #   requests
 cffi==1.15.0
-    # via argon2-cffi-bindings
+    # via
+    #   argon2-cffi-bindings
+    #   cryptography
+    #   pynacl
 cftime==1.6.0
     # via netcdf4
 charset-normalizer==2.0.12
@@ -96,8 +105,12 @@ cloudpickle==2.0.0
     #   dask
     #   datacube
     #   distributed
+cryptography==37.0.4
+    # via paramiko
 cycler==0.11.0
     # via matplotlib
+cython==0.29.32
+    # via pyyapc
 dask[array]==2022.2.1
     # via
     #   dask-image
@@ -129,12 +142,16 @@ entrypoints==0.4
     # via
     #   jupyter-client
     #   nbconvert
+    #   numcodecs
 executing==0.8.3
     # via stack-data
+fasteners==0.17.3
+    # via zarr
 fiona==1.8.21
     # via
     #   -r requirements.in
     #   geopandas
+    #   icesat2-toolkit
     #   rasterstats
 folium==0.12.1.post1
     # via dea-tools
@@ -146,6 +163,11 @@ frozenlist==1.3.0
     #   aiosignal
 fsspec==2022.2.0
     # via dask
+future==0.18.2
+    # via
+    #   atm1b-qfit
+    #   icesat2-toolkit
+    #   pyyapc
 gdal==3.4.1
     # via dea-tools
 geographiclib==1.52
@@ -158,8 +180,14 @@ geopy==2.2.0
     # via -r requirements.in
 greenlet==1.1.2
     # via sqlalchemy
+h5py==3.7.0
+    # via
+    #   icesat2-toolkit
+    #   pyyapc
 heapdict==1.0.1
     # via zict
+icesat2-toolkit==1.0.0.22
+    # via pytmd
 idna==3.3
     # via
     #   requests
@@ -232,13 +260,19 @@ lark-parser==0.12.0
 locket==0.2.1
     # via partd
 lxml==4.8.0
-    # via dea-tools
+    # via
+    #   atm1b-qfit
+    #   dea-tools
+    #   icesat2-toolkit
+    #   pytmd
 markupsafe==2.1.0
     # via jinja2
 matplotlib==3.5.1
     # via
     #   -r requirements.in
+    #   cartopy
     #   dea-tools
+    #   icesat2-toolkit
     #   odc-ui
 matplotlib-inline==0.1.3
     # via
@@ -248,6 +282,8 @@ mistune==0.8.4
     # via nbconvert
 mock==4.0.3
     # via -r requirements.in
+mpi4py==3.1.3
+    # via icesat2-toolkit
 msgpack==1.0.3
     # via distributed
 multidict==6.0.2
@@ -273,34 +309,47 @@ nest-asyncio==1.5.4
     #   nbclient
     #   notebook
 netcdf4==1.5.8
-    # via datacube
+    # via
+    #   datacube
+    #   icesat2-toolkit
+    #   pytmd
 networkx==2.7.1
     # via scikit-image
 notebook==6.4.8
     # via widgetsnbextension
+numcodecs==0.10.2
+    # via zarr
 numexpr==2.8.1
     # via
     #   dea-tools
     #   odc-algo
 numpy==1.22.3
     # via
     #   -r requirements.in
+    #   atm1b-qfit
     #   bottleneck
+    #   cartopy
     #   cftime
     #   dask
     #   dask-image
     #   datacube
     #   dea-tools
     #   folium
+    #   h5py
+    #   icesat2-toolkit
     #   imageio
     #   matplotlib
     #   netcdf4
+    #   numcodecs
     #   numexpr
     #   odc-algo
     #   odc-ui
     #   pandas
     #   pims
+    #   pygeos
+    #   pytmd
     #   pywavelets
+    #   pyyapc
     #   rasterio
     #   rasterstats
     #   scikit-image
@@ -309,14 +358,13 @@ numpy==1.22.3
     #   snuggs
     #   tifffile
     #   xarray
+    #   zarr
 odc-algo==0.2.2
     # via odc-ui
 odc-ui==0.2.1.dev3247
     # via
     #   -r requirements.in
     #   dea-tools
-otps==0.3.2
-    # via -r requirements.in
 owslib==0.25.0
     # via dea-tools
 packaging==21.3
@@ -327,17 +375,23 @@ packaging==21.3
     #   matplotlib
     #   numexpr
     #   scikit-image
+    #   setuptools-scm
     #   xarray
 pandas==1.4.1
     # via
     #   -r requirements.in
     #   datacube
     #   dea-tools
     #   geopandas
+    #   icesat2-toolkit
     #   odc-ui
     #   xarray
 pandocfilters==1.5.0
     # via nbconvert
+paramiko==2.11.0
+    # via
+    #   icesat2-toolkit
+    #   scp
 parso==0.8.3
     # via jedi
 partd==1.2.0
@@ -369,11 +423,15 @@ pure-eval==0.2.2
     # via stack-data
 pycparser==2.21
     # via cffi
+pygeos==0.13
+    # via -r requirements.in
 pygments==2.11.2
     # via
     #   ipython
     #   jupyterlab-pygments
     #   nbconvert
+pynacl==1.5.0
+    # via paramiko
 pyparsing==3.0.7
     # via
     #   matplotlib
@@ -382,21 +440,32 @@ pyparsing==3.0.7
 pyproj==3.3.0
     # via
     #   -r requirements.in
+    #   cartopy
     #   datacube
     #   dea-tools
     #   geopandas
+    #   icesat2-toolkit
     #   owslib
+    #   pytmd
 pyrsistent==0.18.1
     # via jsonschema
+pyshp==2.3.1
+    # via cartopy
 python-dateutil==2.8.2
     # via
     #   botocore
     #   datacube
     #   dea-tools
+    #   icesat2-toolkit
     #   jupyter-client
     #   matplotlib
     #   owslib
     #   pandas
+    #   pytmd
+python-geohash==0.8.5
+    # via -r requirements.in
+pytmd==1.0.8
+    # via -r requirements.in
 pytz==2021.3
     # via
     #   -r requirements.in
@@ -412,6 +481,9 @@ pyyaml==6.0
     #   datacube
     #   distributed
     #   owslib
+    #   pytmd
+pyyapc==0.0.0.8
+    # via icesat2-toolkit
 pyzmq==22.3.0
     # via
     #   jupyter-client
@@ -445,21 +517,31 @@ scikit-learn==1.0.2
     # via
     #   -r requirements.in
     #   dea-tools
+    #   icesat2-toolkit
+    #   pyyapc
 scipy==1.8.0
     # via
     #   -r requirements.in
     #   dask-image
     #   dea-tools
+    #   icesat2-toolkit
+    #   pytmd
     #   scikit-image
     #   scikit-learn
+scp==0.14.4
+    # via icesat2-toolkit
 send2trash==1.8.0
     # via notebook
-shapely==1.8.1.post1
+setuptools-scm==7.0.5
+    # via pytmd
+shapely==1.8.4
     # via
     #   -r requirements.in
+    #   cartopy
     #   datacube
     #   dea-tools
     #   geopandas
+    #   icesat2-toolkit
     #   rasterstats
 simplejson==3.17.6
     # via rasterstats
@@ -469,6 +551,7 @@ six==1.16.0
     #   bleach
     #   fiona
     #   munch
+    #   paramiko
     #   pims
     #   python-dateutil
     #   slicerator
@@ -492,6 +575,8 @@ threadpoolctl==3.1.0
     # via scikit-learn
 tifffile==2022.2.9
     # via scikit-image
+tomli==2.0.1
+    # via setuptools-scm
 toolz==0.11.2
     # via
     #   dask
@@ -526,6 +611,10 @@ traitlets==5.1.1
     #   traittypes
 traittypes==0.2.1
     # via ipyleaflet
+typing-extensions==4.3.0
+    # via
+    #   numcodecs
+    #   setuptools-scm
 urllib3==1.26.8
     # via
     #   botocore
@@ -547,6 +636,8 @@ xyzservices==2022.3.0
     # via ipyleaflet
 yarl==1.7.2
     # via aiohttp
+zarr==2.12.0
+    # via icesat2-toolkit
 zict==2.1.0
     # via distributed
 zipp==3.7.0