Full MDA implementation

.github/workflows/tests.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest]
+        os: [ubuntu-latest]
         python: ["3.10", "3.x"]
     steps:
       - uses: actions/checkout@v2
@@ -22,7 +22,7 @@ jobs:
       - name: Install package
         run: poetry install
       - name: Run tests
-        run: sudo $(poetry env info -p)/bin/pytest --cov=fast_mda_traceroute --cov-report=xml
+        run: sudo $(poetry env info -p)/bin/pytest -n 4 --cov=fast_mda_traceroute --cov-report=xml
       - uses: codecov/codecov-action@v2
 
   docker:

.gitignore

@@ -3,6 +3,9 @@ __pycache__/
 *.py[cod]
 *$py.class
 
+# MacOS
+.DS_Store
+
 # C extensions
 *.so
 
@@ -20,6 +23,7 @@ parts/
 sdist/
 var/
 wheels/
+prof/
 pip-wheel-metadata/
 share/python-wheels/
 *.egg-info/

.pre-commit-config.yaml

@@ -1,29 +1,29 @@
 repos:
 - repo: https://github.com/PyCQA/autoflake
-  rev: v1.4
+  rev: v2.3.1
   hooks:
     - id: autoflake
       args: ["--in-place", "--remove-all-unused-imports"]
 
-- repo: https://github.com/timothycrosley/isort
-  rev: 5.10.1
+- repo: https://github.com/PyCQA/isort
+  rev: 5.13.2
   hooks:
   - id: isort
     args: [--profile=black]
 
 - repo: https://github.com/psf/black
-  rev: 22.3.0
+  rev: 24.2.0
   hooks:
   - id: black
 
-- repo: https://gitlab.com/pycqa/flake8
-  rev: 3.9.2
+- repo: https://github.com/PyCQA/flake8
+  rev: 7.0.0
   hooks:
   - id: flake8
     args: [--ignore=E501]
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.1.0
+  rev: v4.5.0
   hooks:
   - id: trailing-whitespace
     exclude_types: