testing_and_building_repos.yml

name: testing_and_building_repo
on: [push, pull_request]
jobs:
  build: 
    strategy:
      matrix:
        perl: ['5.26'] 
        
    runs-on: ubuntu-latest
    services:
       mysql:
         image: mysql:8.0
         ports:
           - 3306:3306
         env:
           MYSQL_ALLOW_EMPTY_PASSWORD: yes
           MYSQL_ROOT_PASSWORD: null
           MYSQL_DATABASE: npgt
         options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=10s --health-retries=5 
 
    name: Perl ${{ matrix.perl }}
    steps:
    - uses: actions/checkout@v3
    
    - name: Change dbhost to 127.0.0.1
      run: |
          sed -i s/localhost/127.0.0.1/ ${GITHUB_WORKSPACE}/data/config.ini

    - name: set timezone
      run: |
          sudo timedatectl set-timezone Europe/London 
  
    # Caching cpanm external modules
    - name: Cache cpanm external modules
      id: cpanmCache
      uses: actions/cache@v3
      with:
        path: ~/perl5ext
        key: ${{ runner.os }}-build-cpanm-external

    #install libgd-dev and uuid-dev
    - name: install libgd-dev and uuid-dev 
      run: |
          sudo apt-get update
          # https://github.com/actions/runner-images/issues/2139
          sudo apt-get remove -y nginx libgd3
          sudo apt-get install -y libgd-dev uuid-dev libgd-text-perl
    
    - name: install cpanm
      run: |
          wget -qO - https://cpanmin.us | /usr/bin/perl - --sudo App::cpanminus

    - name: running install scripts 
      run: |
          cpanm --local-lib=~/perl5ext local::lib && eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib)
          ${GITHUB_WORKSPACE}/scripts/before_install.sh $WTSI_NPG_GITHUB_URL $WTSI_NPG_BUILD_BRANCH
          
      env:
        WTSI_NPG_GITHUB_URL: https://github.com/wtsi-npg
        WTSI_NPG_BUILD_BRANCH: ${GITHUB_HEAD_REF}

    - name: install cpanm dependencies
      run: |
          eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5npg)
          eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext)
          cpanm --installdeps --notest .

    - name: run Build.PL and ./Build
      run: |
          eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext)
          eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5npg)
          export TEST_AUTHOR=1
          perl Build.PL
          ./Build test --verbose
          ./Build install

    - name: run ./Build 
      run: |
          eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext)
          export TEST_AUTHOR=1
          ./Build dist
          export DIST_FILE=$(ls npg-tracking-*.tar.gz)
          export MD5_FILE=$DIST_FILE.md5
          md5sum $DIST_FILE > $MD5_FILE
          export SHA256_FILE=$DIST_FILE.sha256
          shasum -a 256 $DIST_FILE > $SHA256_FILE

    # Archive logs if failure
    - name: Archive CPAN logs
      if: ${{ failure() }}
      uses: actions/upload-artifact@v2
      with:
        name: cpan_log
        path: /home/runner/.cpanm/work/*/build.log
        retention-days: 5