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Bump org.biojava:biojava-core from 7.0.2 to 7.1.1 #36

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@dependabot dependabot bot commented on behalf of github Mar 26, 2024

Bumps org.biojava:biojava-core from 7.0.2 to 7.1.1.

Release notes

Sourced from org.biojava:biojava-core's releases.

BioJava 7.1.1

Fixed

  • Now mmCIF files that have no author fields in atom_site can be read (e.g. from PyMol or ESMAtlas) #775 #1083
  • No evaluations of arguments in debug level log statements #1086 #789

Removed

  • Minor removal from biojava-core: FileDownloadUtils::copy, replaced by Files::copy

BioJava 7.1.0

Added

  • Class FastaStreamer to read FASTA-formatted files using Java streams

Fixed

  • Various minor fixes for code smells
  • Some dependency upgrades
  • Now using Jakarta as the JAXB implementation #1076
  • Fixed SCOP URL #1077
Changelog

Sourced from org.biojava:biojava-core's changelog.

BioJava 7.1.1

Fixed

  • Now mmCIF files that have no author fields in atom_site can be read (e.g. from PyMol or ESMAtlas) #775 #1083
  • No evaluations of arguments in debug level log statements #1086 #789

Removed

  • Minor removal from biojava-core: FileDownloadUtils::copy, replaced by Files::copy

BioJava 7.1.0

Added

  • Class FastaStreamer to read FASTA-formatted files using Java streams

Fixed

  • Various minor fixes for code smells
  • Some dependency upgrades
  • Now using Jakarta as the JAXB implementation #1076
  • Fixed SCOP URL #1077
Commits
  • 3eaf165 [maven-release-plugin] prepare release biojava-7.1.1
  • 7ed50c1 Updating changelog for next release
  • 81e0544 Merge pull request #1086 from jlerbsc/master
  • f94e577 Merge pull request #1085 from josemduarte/miscfixes
  • 1ac29b3 fix sonar issue 2629 Logging arguments should not require evaluation
  • 7f8f95e Typo
  • 874ce88 Merge remote-tracking branch 'origin/master'
  • de0ef2a Docs
  • 8b0c430 Merge pull request #1083 from josemduarte/parseEsmCifFix
  • df2e83d Merge branch 'master' into miscfixes
  • Additional commits viewable in compare view

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Bumps [org.biojava:biojava-core](https://github.com/biojava/biojava) from 7.0.2 to 7.1.1.
- [Release notes](https://github.com/biojava/biojava/releases)
- [Changelog](https://github.com/biojava/biojava/blob/master/CHANGELOG.md)
- [Commits](biojava/biojava@biojava-7.0.2...biojava-7.1.1)

---
updated-dependencies:
- dependency-name: org.biojava:biojava-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Mar 26, 2024
@dmancilla85 dmancilla85 merged commit 8a50468 into master May 6, 2024
1 of 2 checks passed
@dependabot dependabot bot deleted the dependabot/maven/org.biojava-biojava-core-7.1.1 branch May 6, 2024 00:45
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