Modify readme

topicgenerator/README.md

@@ -1,22 +1,19 @@
 # Topic Generator
 
-This is a Java program that generates topics for public Dockstore entries using OpenAI's gpt-3.5-turbo-16k AI model.
+This is a Java program that generates topics for public Dockstore entries using AI.
 
 The [entries.csv](entries.csv) file contains the TRS ID and default versions of public Dockstore entries to generate topics for. The [results](results) directory contains the generated topics for those entries from running the topic generator. 
 
 ## Setup
 
 ### Configuration file
 
-Create a configuration file like the following. A template `metrics-aggregator.config` file can be found [here](templates/topic-generator.config).
+Create a configuration file like the following. A template `topic-generator.config` file can be found [here](templates/topic-generator.config).
 
 ```
 [dockstore]
 server-url: <Dockstore server url>
 token: <Dockstore admin or curator token>
-
-[ai]
-openai-api-key: <OpenAI API key>
 ```
 
 **Required:**
@@ -26,7 +23,26 @@ openai-api-key: <OpenAI API key>
         - `https://staging.dockstore.org/api`
         - `https://dockstore.org/api`
 - `token`: The Dockstore token of an admin or curator. This token is used to upload topics to the webservice.
-- `openai-api-key`: The OpenAI API key required for using the OpenAI APIs. See https://platform.openai.com/docs/api-reference/authentication for more details. This is used to generate topics.
+
+### Authentication to invoke AI models
+
+#### AWS Bedrock
+
+By default, the program uses AWS Bedrock to invoke the Anthropic Claude 3 Haiku model to generate topics. 
+AWS credentials that have permissions to use the AWS Bedrock API are required and they must have access to the Anthropic Claude models on AWS.
+There are several ways that this can be provided.
+Read [this](https://docs.aws.amazon.com/sdk-for-java/latest/developer-guide/credentials.html#credentials-chain) for the default credential provider chain.
+
+
+#### OpenAI (deprecated)
+
+We have moved away from using OpenAI models to generate topics, but if you wish to use it, you need to add the following section to your configuration file.
+See https://platform.openai.com/docs/api-reference/authentication for more details.
+
+```
+[ai]
+openai-api-key: <OpenAI API key>
+```
 
 ## Running the program
 
@@ -49,6 +65,10 @@ Usage: <main class> [options] [command] [command options]
             name of the entries to generate topics for. The first line of the 
             file should contain the CSV fields: trsID,version
             Default: ./entries.csv
+          -m, --model
+            The AI model to use
+            Default: CLAUDE_3_HAIKU
+            Possible Values: [CLAUDE_3_5_SONNET, CLAUDE_3_HAIKU, GPT_4O_MINI]
 
     upload-topics      Upload AI topics, generated by the generate-topics 
             command, for public Dockstore entries.
@@ -59,7 +79,7 @@ Usage: <main class> [options] [command] [command options]
             of the entries to upload topics for. The first line of the file 
             should contain the CSV fields: trsId,aiTopic. The output file 
             generated by the generate-topics command can be used as the 
-            argument.
+            argument. 
 ```
 
 ### generate-topics

topicgenerator/templates/topic-generator.config

@@ -1,7 +1,4 @@
 # This is a template topic generator config file for prod. Modify it for different environments.
 [dockstore]
 server-url: https://dockstore.org/api
-token: YOUR_ADMIN_OR_CURATOR_DOCKSTORE_TOKEN
-
-[ai]
-openai-api-key: YOUR_OPENAI_API_KEY
+token: YOUR_ADMIN_OR_CURATOR_DOCKSTORE_TOKEN