A comparison between TRS and other APIs.
| Resource | TRS | Bio.tools |
|---|---|---|
| list resources | GET http://editor2.swagger.io/api/ga4gh/v1/tools |
curl -X GET "https://bio.tools/api/tool/?page=1&format=json&name=signalp&sort=name&ord=asc&q=protein-signal-peptide-detection" |
| resource details | GET http://editor2.swagger.io/api/ga4gh/v1/tools/{id} |
curl -X GET "https://bio.tools/api/tool/signalp/?format=json" |
TRS
to do
bio.tools
{
"next" : null,
"count" : 1,
"list" : [
{
"link" : [
{
"type" : "Repository",
"comment" : null,
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp"
}
],
"topic" : [
{
"uri" : "http://edamontology.org/topic_3510",
"term" : "Protein sites, features and motifs"
}
],
"availability" : null,
"documentation" : [
{
"type" : "General",
"comment" : null,
"url" : "http://www.cbs.dtu.dk/services/SignalP"
}
],
"toolType" : [
"Command-line tool",
"Web application"
],
"version_hash" : null,
"editPermission" : {
"type" : "group",
"authors" : [
"CBS"
]
},
"additionDate" : "2015-12-17T14:23:00Z",
"credit" : [
{
"typeEntity" : "Person",
"typeRole" : "Developer",
"gridId" : null,
"orcidId" : null,
"email" : null,
"url" : null,
"name" : "TN Petersen",
"comment" : null
},
{
"gridId" : null,
"typeRole" : "Provider",
"typeEntity" : "Institute",
"orcidId" : null,
"email" : null,
"comment" : null,
"name" : "CBS",
"url" : null
},
{
"name" : "Henrik Nielsen",
"url" : null,
"comment" : null,
"orcidId" : null,
"email" : "hnielsen@cbs.dtu.dk",
"typeEntity" : null,
"gridId" : null,
"typeRole" : "Developer"
}
],
"accessibility" : [],
"description" : "Prediction of the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms.",
"version" : "4.1",
"collectionID" : [
"CBS"
],
"cost" : "Free of charge (with restrictions)",
"elixirInfo" : null,
"lastUpdate" : "2017-08-17T11:46:29Z",
"id" : "signalp",
"name" : "SignalP",
"function" : [
{
"output" : [
{
"data" : {
"uri" : "http://edamontology.org/data_1277",
"term" : "Protein features"
},
"format" : [
{
"uri" : "http://edamontology.org/format_2305",
"term" : "GFF"
}
]
},
{
"format" : [],
"data" : {
"term" : "Sequence report",
"uri" : "http://edamontology.org/data_2955"
}
}
],
"input" : [
{
"format" : [
{
"uri" : "http://edamontology.org/format_1929",
"term" : "FASTA"
}
],
"data" : {
"uri" : "http://edamontology.org/data_2044",
"term" : "Sequence"
}
}
],
"comment" : "predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms",
"operation" : [
{
"term" : "Protein signal peptide detection",
"uri" : "http://edamontology.org/operation_0418"
},
{
"uri" : "http://edamontology.org/operation_0422",
"term" : "Protein cleavage site prediction"
}
]
}
],
"maturity" : "Mature",
"downtime" : null,
"operatingSystem" : [
"Linux",
"Mac"
],
"owner" : "cbs_admin",
"license" : null,
"canonicalID" : null,
"download" : [
{
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp",
"comment" : null,
"type" : "Source code"
},
{
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp",
"comment" : null,
"type" : "Binaries"
}
],
"publication" : [
{
"pmid" : "21959131",
"doi" : null,
"type" : "Primary",
"version" : null,
"pmcid" : null
},
{
"pmcid" : null,
"type" : "Other",
"version" : null,
"doi" : "doi:10.1038/nmeth.1701",
"pmid" : null
}
],
"language" : [],
"contact" : [
{
"url" : null,
"name" : "Henrik Nielsen",
"tel" : null,
"email" : "hnielsen@cbs.dtu.dk"
}
],
"homepage" : "http://cbs.dtu.dk/services/SignalP/",
"validated" : 0
}
],
"previous" : null
}
TRS
todo
bio.tools
{
"id" : "signalp",
"contact" : [
{
"name" : "Henrik Nielsen",
"url" : null,
"email" : "hnielsen@cbs.dtu.dk",
"tel" : null
}
],
"toolType" : [
"Command-line tool",
"Web application"
],
"owner" : "cbs_admin",
"license" : null,
"maturity" : "Mature",
"additionDate" : "2015-12-17T14:23:00Z",
"canonicalID" : null,
"collectionID" : [
"CBS"
],
"lastUpdate" : "2017-08-17T11:46:29Z",
"link" : [
{
"type" : "Repository",
"comment" : null,
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp"
}
],
"topic" : [
{
"uri" : "http://edamontology.org/topic_3510",
"term" : "Protein sites, features and motifs"
}
],
"credit" : [
{
"typeRole" : "Developer",
"orcidId" : null,
"gridId" : null,
"name" : "TN Petersen",
"typeEntity" : "Person",
"url" : null,
"email" : null,
"comment" : null
},
{
"orcidId" : null,
"typeRole" : "Provider",
"email" : null,
"comment" : null,
"name" : "CBS",
"gridId" : null,
"typeEntity" : "Institute",
"url" : null
},
{
"typeRole" : "Developer",
"orcidId" : null,
"name" : "Henrik Nielsen",
"gridId" : null,
"url" : null,
"typeEntity" : null,
"comment" : null,
"email" : "hnielsen@cbs.dtu.dk"
}
],
"editPermission" : {
"authors" : [
"CBS"
],
"type" : "group"
},
"accessibility" : [],
"documentation" : [
{
"type" : "General",
"comment" : null,
"url" : "http://www.cbs.dtu.dk/services/SignalP"
}
],
"homepage" : "http://cbs.dtu.dk/services/SignalP/",
"publication" : [
{
"type" : "Primary",
"pmcid" : null,
"pmid" : "21959131",
"doi" : null,
"version" : null
},
{
"type" : "Other",
"version" : null,
"doi" : "doi:10.1038/nmeth.1701",
"pmid" : null,
"pmcid" : null
}
],
"description" : "Prediction of the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms.",
"elixirInfo" : null,
"availability" : null,
"cost" : "Free of charge (with restrictions)",
"version" : "4.1",
"downtime" : null,
"download" : [
{
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp",
"type" : "Source code",
"comment" : null
},
{
"comment" : null,
"type" : "Binaries",
"url" : "http://www.cbs.dtu.dk/cgi-bin/sw_request?signalp"
}
],
"function" : [
{
"output" : [
{
"data" : {
"term" : "Protein features",
"uri" : "http://edamontology.org/data_1277"
},
"format" : [
{
"uri" : "http://edamontology.org/format_2305",
"term" : "GFF"
}
]
},
{
"data" : {
"term" : "Sequence report",
"uri" : "http://edamontology.org/data_2955"
},
"format" : []
}
],
"operation" : [
{
"term" : "Protein signal peptide detection",
"uri" : "http://edamontology.org/operation_0418"
},
{
"uri" : "http://edamontology.org/operation_0422",
"term" : "Protein cleavage site prediction"
}
],
"input" : [
{
"format" : [
{
"uri" : "http://edamontology.org/format_1929",
"term" : "FASTA"
}
],
"data" : {
"uri" : "http://edamontology.org/data_2044",
"term" : "Sequence"
}
}
],
"comment" : "predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms"
}
],
"validated" : 0,
"version_hash" : null,
"operatingSystem" : [
"Linux",
"Mac"
],
"language" : [],
"name" : "SignalP"
}