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# Donaldson Lab Fiberphotometry
> This project is for performing analysis on animal fiberphotemetry and behavior data
In order to use this code you must have collected fiberphotometry data and behavior data collected using the behavior coding software BORIS (https://boris.readthedocs.io/en/latest/#behavioral-observation-research-interactive-software-boris-user-guide). This project currently generates plots marking behavioral occurances on raw fluoresence data (behavior_onefiber_wdriver and behavior_twofiber_wdriver), and produces a Z-score plot (Zscore_wdriver) which graphs average Z-score and SEM for all stacked behavioral occurances. BORIS_format can be used to parse and format raw output for use with the rest of the code. Once the behavior data is formatted, behavior_driver is the only code that must be run by the user (but all scripts must be downloaded).
In order to use this code you must have collected fiberphotometry data and behavior data collected using the behavior coding software BORIS (https://boris.readthedocs.io/en/latest/#behavioral-observation-research-interactive-software-boris-user-guide). This project currently generates plots marking behavioral occurances on raw fluoresence data (behavior_onefiber_wdriver and behavior_twofiber_wdriver), and produces a Z-score plot (Zscore_wdriver) which graphs average Z-score and SEM for all stacked behavioral occurances. BORIS_format is used to parse and format raw output for use with the rest of the code. The behavior_driver is the only script that must be run by the user (but all scripts must be downloaded).

## Installation

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