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run adata.uns['SPECTRA_overlap'].index, and there are some factors without name? #46

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Joyjoyjoyc opened this issue May 18, 2024 · 1 comment
Open

run adata.uns['SPECTRA_overlap'].index, and there are some factors without name? #46

Joyjoyjoyc opened this issue May 18, 2024 · 1 comment

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@Joyjoyjoyc
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Hi, everyone!
As I follow the tutorial of spectra to fit model without cell type annotations after 10000 epochs, and run adata.uns['SPECTRA_overlap'].index, I got some factor without name as follow. I want to know why? Thanks!

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@Joyjoyjoyc
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And there are also some duplicate factor names, like the factor 81 and factor 87 are both pentose-phosphate-pathway, but the umap plot looks quite different.
image

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