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dportik committed Feb 26, 2019
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Expand Up @@ -46,12 +46,12 @@ The goal of running **MonoPhylo** is to determine which groupings are monophylet

In addition to the instructions posted here, two complete example analyses can be found in the [Example-data](https://github.com/dportik/MonoPhylo/tree/master/Example-data) folder. The complete set of input files and output files generated for each step, along with instructions, can be found for each analysis folder present.

Quick Navigation:
**Quick Navigation for Instructions:**

### [Obtaining a list of tree tips](#OLTP)
### [Defining groups for the tip labels](#DGTP)
### [Ensuring the tree is properly rooted](#ETPR)
### [Assessing the phylogenetic status of groups](#APSG)
+ [**Obtaining a list of tree tips**](#OLTP)
+ [Defining groups for the tip labels](#DGTP)
+ [Ensuring the tree is properly rooted](#ETPR)
+ [Assessing the phylogenetic status of groups](#APSG)


### 1. Obtaining a list of tree tips <a name="OLTP"></a>
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