FROG analysis of all models #13
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| name: FROG analysis of all models | |
| on: | |
| workflow_dispatch | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: python -m pip install fbc-curation | |
| - name: Install dependencies | |
| run: python -m pip install pandas==1.4.4 | |
| - name: Install dependencies | |
| run: python -m pip install numpy==1.19.5 | |
| - name: Create FROG report | |
| run: | | |
| runfrog -i ./models/iCstr1054FB23.xml -o ./FROG/iCstr1054FB23_FROG.omex | |
| runfrog -i ./models/iCstr1197FB23.xml -o ./FROG/iCstr1197FB23_FROG.omex | |
| runfrog -i ./models/iCstr1115FB23.xml -o ./FROG/iCstr1115FB23_FROG.omex | |
| runfrog -i ./models/iCstr1116FB23.xml -o ./FROG/iCstr1116FB23_FROG.omex | |
| runfrog -i ./models/iCstrKCNa01FB23.xml -o ./FROG/iCstrKCNa01FB23_FROG.omex | |
| - name: Unzip Omex files for easier access | |
| run: | | |
| unzip ./FROG/iCstr1054FB23_FROG.omex -d ./FROG/iCstr1054FB23 | |
| rm ./FROG/iCstr1054FB23/model.xml | |
| rm ./FROG/iCstr1054FB23/manifest.xml | |
| cp -R ./FROG/iCstr1054FB23/FROG/cameo ./FROG/iCstr1054FB23 | |
| rm -R ./FROG/iCstr1054FB23/FROG/cameo | |
| cp -R ./FROG/iCstr1054FB23/FROG/cobrapy ./FROG/iCstr1054FB23 | |
| rm -R ./FROG/iCstr1054FB23/FROG/cobrapy | |
| rm -r ./FROG/iCstr1054FB23/FROG/ | |
| unzip ./FROG/iCstr1197FB23_FROG.omex -d ./FROG/iCstr1197FB23 | |
| rm ./FROG/iCstr1197FB23/model.xml | |
| rm ./FROG/iCstr1197FB23/manifest.xml | |
| cp -R ./FROG/iCstr1197FB23/FROG/cameo ./FROG/iCstr1197FB23 | |
| rm -R ./FROG/iCstr1197FB23/FROG/cameo | |
| cp -R ./FROG/iCstr1197FB23/FROG/cobrapy ./FROG/iCstr1197FB23 | |
| rm -R ./FROG/iCstr1197FB23/FROG/cobrapy | |
| rm -r ./FROG/iCstr1197FB23/FROG/ | |
| unzip ./FROG/iCstr1115FB23_FROG.omex -d ./FROG/iCstr1115FB23 | |
| rm ./FROG/iCstr1115FB23/model.xml | |
| rm ./FROG/iCstr1115FB23/manifest.xml | |
| cp -R ./FROG/iCstr1115FB23/FROG/cameo ./FROG/iCstr1115FB23 | |
| rm -R ./FROG/iCstr1115FB23/FROG/cameo | |
| cp -R ./FROG/iCstr1115FB23/FROG/cobrapy ./FROG/iCstr1115FB23 | |
| rm -R ./FROG/iCstr1115FB23/FROG/cobrapy | |
| rm -r ./FROG/iCstr1115FB23/FROG/ | |
| unzip ./FROG/iCstr1116FB23_FROG.omex -d ./FROG/iCstr1116FB23 | |
| rm ./FROG/iCstr1116FB23/model.xml | |
| rm ./FROG/iCstr1116FB23/manifest.xml | |
| cp -R ./FROG/iCstr1116FB23/FROG/cameo ./FROG/iCstr1116FB23 | |
| rm -R ./FROG/iCstr1116FB23/FROG/cameo | |
| cp -R ./FROG/iCstr1116FB23/FROG/cobrapy ./FROG/iCstr1116FB23 | |
| rm -R ./FROG/iCstr1116FB23/FROG/cobrapy | |
| rm -r ./FROG/iCstr1116FB23/FROG/ | |
| unzip ./FROG/iCstrKCNa01FB23_FROG.omex -d ./FROG/iCstrKCNa01FB23 | |
| rm ./FROG/iCstrKCNa01FB23/model.xml | |
| rm ./FROG/iCstrKCNa01FB23/manifest.xml | |
| cp -R ./FROG/iCstrKCNa01FB23/FROG/cameo ./FROG/iCstrKCNa01FB23 | |
| rm -R ./FROG/iCstrKCNa01FB23/FROG/cameo | |
| cp -R ./FROG/iCstrKCNa01FB23/FROG/cobrapy ./FROG/iCstrKCNa01FB23 | |
| rm -R ./FROG/iCstrKCNa01FB23/FROG/cobrapy | |
| rm -r ./FROG/iCstrKCNa01FB23/FROG/ | |
| - name: Commit FROG report | |
| id: commit | |
| run: | | |
| git config --local user.email "famke.baeuerle@gmail.com" | |
| git config --local user.name "famosab" | |
| git add --all | |
| if [-z "$(git status --porcelain)"]; then | |
| echo "::set-output name=push::false" | |
| else | |
| git commit -m "Update FROG Report" -a | |
| echo "::set-output name=push::true" | |
| fi | |
| - name: Push changes of the report | |
| if: steps.commit.outputs.push == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} |