KEGGtranslator 2.2.0

Translations to SBML or BioPAX

• Added separate format options for SBML_L2V4 and SBML_L3V1
• Updated SBML groups extension support to proposal Version 3
• Default compartment now gets an appropriate SBO term
• Added PSI-MI and PSI-MOD ontologies to SBML and BioPAX translations
• Improved the translation of KGML-relations to BioPAX
• Fixed a rare bug that potentially caused spaces in BioPAX IDs

Pathway visualizations and translations to GraphML, GML and similar

• Pathway-visualizations now optionally use reaction nodes to visualize KGML-reactions
  ... therefore, the 'grey arrow' option from the preferences has been renamed to 'include nodes for metabolic reactions'
• Added a novel option and the functionality to convert the KEGG background image to greyscale
• Compound/metabolite/small molecule-nodes now wrap their caption to a maximum of two lines with a maximum width of 66px each
• Captions of groups are now wrapped inside the group node
• Removed the '+' symbol from group nodes

Other bugfixes and improvements

• Improved command-line usability
• Various further improvements related to the visualization of pathways and models