Chore: update for GiottoClass & GiottoVisuals

DESCRIPTION

@@ -32,7 +32,7 @@ Depends:
     utils (>= 3.5.0),
     R (>= 3.5.0),
     methods,
-    GiottoClass (>= 0.2.4)
+    GiottoClass (>= 0.3.0)
 Imports:
     BiocParallel,
     BiocSingular,
@@ -43,7 +43,7 @@ Imports:
     ggplot2 (>= 3.1.1),
     ggrepel,
     GiottoUtils (>= 0.1.6),
-    GiottoVisuals (>= 0.1.1),
+    GiottoVisuals (>= 0.2.0),
     igraph (>= 1.2.4.1),
     jsonlite,
     limma,
@@ -148,6 +148,7 @@ Collate:
     'suite_reexports.R'
     'image_registration.R'
     'interactivity.R'
+    'kriging.R'
     'package_imports.R'
     'poly_influence.R'
     'python_hmrf.R'

NAMESPACE

@@ -156,6 +156,7 @@ export(detectSpatialPatterns)
 export(dimCellPlot)
 export(dimCellPlot2D)
 export(dimFeatPlot2D)
+export(dimFeatPlot3D)
 export(dimGenePlot3D)
 export(dimPlot)
 export(dimPlot2D)
@@ -429,12 +430,14 @@ export(spatDeconvPlot)
 export(spatDimCellPlot)
 export(spatDimCellPlot2D)
 export(spatDimFeatPlot2D)
+export(spatDimFeatPlot3D)
 export(spatDimGenePlot3D)
 export(spatDimPlot)
 export(spatDimPlot2D)
 export(spatDimPlot3D)
 export(spatFeatPlot2D)
 export(spatFeatPlot2D_single)
+export(spatFeatPlot3D)
 export(spatGenePlot3D)
 export(spatIDs)
 export(spatInSituPlotDensity)
@@ -484,6 +487,7 @@ export(violinPlot)
 export(wrap)
 export(writeGiottoLargeImage)
 export(writeHMRFresults)
+exportMethods(interpolateFeature)
 import(GiottoClass)
 import(GiottoUtils)
 import(GiottoVisuals)
@@ -716,6 +720,7 @@ importFrom(GiottoVisuals,addGiottoImageToSpatPlot)
 importFrom(GiottoVisuals,dimCellPlot)
 importFrom(GiottoVisuals,dimCellPlot2D)
 importFrom(GiottoVisuals,dimFeatPlot2D)
+importFrom(GiottoVisuals,dimFeatPlot3D)
 importFrom(GiottoVisuals,dimGenePlot3D)
 importFrom(GiottoVisuals,dimPlot)
 importFrom(GiottoVisuals,dimPlot2D)
@@ -750,12 +755,14 @@ importFrom(GiottoVisuals,spatDeconvPlot)
 importFrom(GiottoVisuals,spatDimCellPlot)
 importFrom(GiottoVisuals,spatDimCellPlot2D)
 importFrom(GiottoVisuals,spatDimFeatPlot2D)
+importFrom(GiottoVisuals,spatDimFeatPlot3D)
 importFrom(GiottoVisuals,spatDimGenePlot3D)
 importFrom(GiottoVisuals,spatDimPlot)
 importFrom(GiottoVisuals,spatDimPlot2D)
 importFrom(GiottoVisuals,spatDimPlot3D)
 importFrom(GiottoVisuals,spatFeatPlot2D)
 importFrom(GiottoVisuals,spatFeatPlot2D_single)
+importFrom(GiottoVisuals,spatFeatPlot3D)
 importFrom(GiottoVisuals,spatGenePlot3D)
 importFrom(GiottoVisuals,spatInSituPlotDensity)
 importFrom(GiottoVisuals,spatInSituPlotHex)

R/suite_reexports.R

@@ -473,7 +473,9 @@ GiottoVisuals::dimCellPlot2D
 #' @export
 GiottoVisuals::dimFeatPlot2D
 #' @export
-GiottoVisuals::dimGenePlot3D
+GiottoVisuals::dimGenePlot3D # TODO remove in next version
+#' @export
+GiottoVisuals::dimFeatPlot3D
 #' @export
 GiottoVisuals::dimPlot
 #' @export
@@ -545,7 +547,9 @@ GiottoVisuals::spatDimCellPlot2D
 #' @export
 GiottoVisuals::spatDimFeatPlot2D
 #' @export
-GiottoVisuals::spatDimGenePlot3D
+GiottoVisuals::spatDimGenePlot3D # TODO remove in next version
+#' @export
+GiottoVisuals::spatDimFeatPlot3D
 #' @export
 GiottoVisuals::spatDimPlot
 #' @export
@@ -557,7 +561,9 @@ GiottoVisuals::spatFeatPlot2D
 #' @export
 GiottoVisuals::spatFeatPlot2D_single
 #' @export
-GiottoVisuals::spatGenePlot3D
+GiottoVisuals::spatGenePlot3D # TODO remove in next version
+#' @export
+GiottoVisuals::spatFeatPlot3D
 #' @export
 GiottoVisuals::spatPlot
 #' @export