Discussions

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  Filter specific genes from the Giotto object

  IgLab-UNAV started Oct 14, 2024 in General

  

  

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  Cell spatial location differs between sdimx/y and CenterX/Y_global_px

  rbutleriii asked Sep 27, 2024 in Q&A · Unanswered

  

  

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  Combine Multiple Samples

  marsdenl started Jun 30, 2024 in General · Closed

  

  

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  DWLS deconvolution

  Umaarasu asked Aug 11, 2024 in Q&A · Unanswered

  

  

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  Issues with installing Giotto

  wqcho00 asked Feb 7, 2024 in Q&A · Answered

  

  

  

  

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  Batch adjusting and scaling the dataset

  rbutleriii asked Apr 26, 2024 in Q&A · Unanswered

  

  

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  Nanostring CosMx and AtoMx exported data

  jmodlis started Oct 26, 2023 in Ideas

  

  

  

  

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  Giotto save and read

  Umaarasu asked Aug 21, 2023 in Q&A · Unanswered

  

  

  

  

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  Comparison of spatial ligand receptor interacttions across groups

  rbutleriii asked Apr 20, 2024 in Q&A · Unanswered

  

  

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  Welcome to Giotto Discussions!

  RubD started Dec 9, 2020 in General

  

  

  

  

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  How to properly subset by FOV

  rbutleriii asked Jan 12, 2024 in Q&A · Unanswered

  

  

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  annotateGiotto() function + celldex reference file for single cell analysis = Annotation Interrupted

  tsoruu asked Sep 13, 2023 in Q&A · Unanswered

  

  

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  Choosing a max Delaunay distance

  rbutleriii asked Jan 9, 2024 in Q&A · Answered

  

  

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  When will the new giotto suite be released?

  chrkuo started Sep 9, 2023 in General

  

  

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  Error in Spatial grid

  Umaarasu started Aug 26, 2023 in General

  

  

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  Cell proximity enrichment for features?

  lima1 asked May 24, 2023 in Q&A · Unanswered

  

  

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  Rotate 2D spatial plot

  millerkaplanlab started May 18, 2023 in General

  

  

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  Error in getSpatialDataset

  Umaarasu started May 4, 2023 in General · Closed

  

  

  

  

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  joinGiottoObjects memory run out

  StanislavBratchikov asked Apr 27, 2023 in Q&A · Unanswered

  

  

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  SpatialDWLS analysis

  vwtlin asked Feb 28, 2023 in Q&A · Answered

  

  

  

  

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  Normalization of imaging based transcriptomic data

  Pointillomic asked Mar 7, 2023 in Q&A · Unanswered

  

  

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  Let the installGiottoEnvironment() function accept a specified conda path.

  IMJoeyZhu started Jan 27, 2023 in Ideas

  

  

  

  

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  Conversion / Integration of the Old Giotto object into the Updated Giotto Suite object

  michellemlin asked Jan 27, 2023 in Q&A · Unanswered

  

  

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  One idea about Cell Neighborhood: Interaction Changed Features

  GCatatGC started Jan 20, 2023 in Ideas

  

  

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  How do I create the extdata/sig_matrix.txt equivalent of my own data?

  sayadennis asked Dec 14, 2022 in Q&A · Answered

  

  

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