Issues with installing Giotto

[wqcho00]

Hi, I'm trying to install Giotto via R on the HPC server.

But I'm unable to install it. It says: ERROR: dependencies ‘GiottoClass’, ‘GiottoVisuals’ are not available for package ‘Giotto’. When I installed 'GiottoClass' individually, this error popped up: Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '~/R/x86_64-pc-linux-gnu-library/4.1/terra/libs/terra.so':

I'd appreciate your help. Thank you!

[RubD]

I'd suggest to try pak::pkg_install().

[wqcho00]

yes, it works, thank you!!

[hiraksarkar]

Thanks! I am getting this error ✖ Failed to build GiottoClass 0.3.1 (2.7s) while using Pak. It's producing the following error

<callr_error/rlib_error_3_0/rlib_error/error>
Error:
! error in pak subprocess
Caused by error in `stop_task_build(state, worker)`:
! Failed to build source package GiottoClass.
---
Backtrace:
1. pak::pkg_install("drieslab/Giotto")
2. pak:::remote(function(...) get("pkg_install_do_plan", asNamespace("pak"))(...), …
3. err$throw(res$error)
---
Subprocess backtrace:
 1. base::withCallingHandlers(cli_message = function(msg) { …
 2. get("pkg_install_do_plan", asNamespace("pak"))(...)
 3. proposal$install()
 4. pkgdepends::install_package_plan(plan, lib = private$library, num_workers = nw, …
 5. base::withCallingHandlers({ …
 6. pkgdepends:::handle_events(state, events)
 7. pkgdepends:::handle_event(state, i)
 8. pkgdepends:::stop_task(state, worker)
 9. pkgdepends:::stop_task_build(state, worker)
10. base::throw(pkg_error("Failed to build source package {.pkg {pkg}}.", …
11. | base::signalCondition(cond)
12. global (function (e) …