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Giotto 4.1.4 - hotix visium spot polygon sizing #1060

Merged
merged 7 commits into from
Oct 30, 2024
Merged

Giotto 4.1.4 - hotix visium spot polygon sizing #1060

merged 7 commits into from
Oct 30, 2024

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jiajic
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@jiajic jiajic commented Oct 30, 2024

Changes

  • createGiottoVisiumObject() apply a modifier of 0.8461538 to visium spot diameter to reflect actual spot size
  • doLeidenClusterIgraph() deprecate param resolution_parameter in favor of resolution

Enhancements

  • createGiottoVisiumObject() append multiplicative scalefactor to get micron
    values from the current coordinate units during Visium object creation.
    Accessible through instructions(gobject, "micron_scale")

@jiajic jiajic merged commit 2b0e652 into suite Oct 30, 2024
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