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fix warnings from biocchek and add github workflow #1

fix warnings from biocchek and add github workflow

fix warnings from biocchek and add github workflow #1

Triggered via pull request September 26, 2024 19:40
Status Failure
Total duration 34m 29s
Artifacts 2

R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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5 errors and 35 warnings
macos-latest (release)
R CMD check found WARNINGs
macos-latest (release)
Process completed with exit code 1.
ubuntu-latest (release)
Process completed with exit code 1.
windows-latest (release)
R CMD check found WARNINGs
windows-latest (release)
Process completed with exit code 1.
macos-latest (release)
Undocumented S4 methods:
macos-latest (release)
Objects in \usage without \alias in Rd file 'as.list.Rd':
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
windows-latest (release)
Undocumented S4 methods:
windows-latest (release)
Objects in \usage without \alias in Rd file 'as.list.Rd':
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:

Artifacts

Produced during runtime
Name Size
Windows-X64-rrelease-1-results
15.7 MB
macOS-ARM64-rrelease-0-results
15.6 MB