chore: try to fix covr workflow #94

	# This workflow uses actions that are not certified by GitHub.
	# They are provided by a third-party and are governed by
	# separate terms of service, privacy policy, and support
	# documentation.
	#
	# See https://github.com/r-lib/actions/tree/master/examples#readme for
	# additional example workflows available for the R community.


	name: Dev Workflow - Test and check
	on:
	push:
	branches: [ "dev" ]

	permissions:
	contents: read

	jobs:
	R-CMD-check:
	name: R CMD Check
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	runs-on: ubuntu-latest

	steps:

	- name: Checkout repo for workflow access
	uses: actions/checkout@v4

	- name: Setup pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Set up R environment
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Set up dependencies (general)
	uses: r-lib/actions/setup-r-dependencies@v2
	env:
	_R_CHECK_FORCE_SUGGESTS: false
	_R_CHECK_RD_XREFS: false
	with:
	dependencies: '"hard"' # do not use suggested dependencies
	extra-packages: any::rcmdcheck, any::testthat, any::rlang, any::R.utils, any::knitr, any::rmarkdown, any::qs, any::sp, any::stars, any::raster, any::sf, any::scattermore, any::exactextractr, any::RTriangle, any::geometry, github::drieslab/GiottoData

	- name: Run R CMD check
	uses: r-lib/actions/check-r-package@v2
	with:
	upload-snapshots: true
	error-on: '"error"' # workflow errors on error only, can change to include warnings

	# show testthat output for ease of access
	- name: Show testthat output
	if: always()
	run: find check -name 'testthat.Rout*' -exec cat '{}' \; \|\| true
	shell: bash

Provide feedback