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Merge branch 'dev' into dev2
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jiajic committed Aug 27, 2024
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## breaking changes
- `set_giotto_python_path()` will now also initialize python env to set by default and print which python env is active, but otherwise do nothing if any python env has already been initialized.
- `checkGiottoEnvironment()` no longer checks specifically for the `"giotto_env"` environment, but is instead a general check for whether Giotto can detect a python environment and also which it is.
- deprecated `readGiottoInstructions()`, `showGiottoInstructions()`, `changeGiottoInstructions()`, `replaceGiottoInstructions()` in favor of `instructions()` generic

## bug fixes
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